Planaria EST Database


DrC_01302

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01302
         (848 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KIP8|CWC25_CRYNE  Pre-mRNA splicing factor CWC25              42   0.003
sp|Q9UKJ3|K0553_HUMAN  Protein KIAA0553                            42   0.003
sp|Q9W420|SPT6H_DROME  Transcription elongation factor SPT6        38   0.031
sp|P09079|HXB5_MOUSE  Homeobox protein Hox-B5 (Hox-2.1) (MU-...    38   0.041
sp|Q9DE13|BAZ2B_CHICK  Bromodomain adjacent to zinc finger d...    34   0.45 
sp|P09067|HXB5_HUMAN  Homeobox protein Hox-B5 (Hox-2A) (HHO....    34   0.58 
sp|P28054|RRPP_PI1HC  Phosphoprotein (P protein)                   34   0.58 
sp|Q8VC48|PEX12_MOUSE  Peroxisome assembly protein 12 (Perox...    33   0.76 
sp|P37370|VRP1_YEAST  Verprolin                                    33   0.76 
sp|P54675|PI3K3_DICDI  Phosphatidylinositol 3-kinase 3 (PI3-...    33   1.00 
>sp|Q5KIP8|CWC25_CRYNE Pre-mRNA splicing factor CWC25
          Length = 434

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 41/170 (24%), Positives = 65/170 (38%)
 Frame = +3

Query: 51  EVRQRLNNQSNSNKELTAVGSKMRRGDHLPGGGNSTSHRRGLSTTTYFGGESLEVTNGTS 230
           + R+R +    S  E    G   R G H P G   + HR         G           
Sbjct: 267 DYRRRNDTTRGSFDESPRKGGGNRWGSHGPDGYRRSDHRDDGFRERQRGD---------- 316

Query: 231 YRYRPPPPNRLSRNQNTPQNIRRPRPQSDAAQMSSNTSSVSGQLSPQHYQYAEDSEEDVM 410
              R PPP  LS N +TP       P S AA ++ NTS++  Q + +    +  ++E   
Sbjct: 317 ---RIPPPRHLSYNHSTPDVRPSSPPSSSAAPVNRNTSTLEDQRAARLAAMSASADELYS 373

Query: 411 IPGELMSPTNGQRRSIVESDHRNYASYNQQQQQRIGKSVNNDTRKYQYGL 560
              + ++    + R   E D +    Y ++Q      S N  +++ Q GL
Sbjct: 374 SRSKSLAARAEEERREQEKDEKMRQKYGKEQ-----ASANFFSQQSQLGL 418
>sp|Q9UKJ3|K0553_HUMAN Protein KIAA0553
          Length = 1089

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 66/278 (23%), Positives = 95/278 (34%), Gaps = 28/278 (10%)
 Frame = +3

Query: 3    TRQDNIRPRSGEYNITEVRQRLNNQSNSNKELTAVGSKMRRGDHLPGGGNST-------- 158
            T + + +  SGE +    ++R   +   NK      S+       PG G+          
Sbjct: 282  TEEKSSKAESGEKS----KKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRA 337

Query: 159  ---SHRRGLSTTTYFGGESLEVTNGTSYRYRPP-------PPNRLSRNQNTPQNIR---R 299
               S RR L       G+  E   G+S +           PP+   R   T ++ R   R
Sbjct: 338  QDDSQRRSLPAEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHR 397

Query: 300  PRPQSDAAQMSSNTSSVSGQLSPQHYQYAEDSEEDVMIPGELMSPTNGQRRSIVESDHRN 479
             +P S        +S    Q SP  Y   E+ EED           +G+R S   S  R+
Sbjct: 398  SQPSSGDEDSDDASSHRLHQKSPSQYS-EEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRS 456

Query: 480  YASYNQQQQQRIGKSVNNDTRKYQYGLSYPDHLYCKHHRYYNWHSSVSGDSISPDMTNCK 659
            Y+S             ++D   Y    SY D  Y  +      HS  S DS   D  + K
Sbjct: 457  YSS---------SSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSK 507

Query: 660  TEPN----LKSDKEGEI---LSHSTLRSPSLERQLSPG 752
                      SD +  +    S S  RS + ER  S G
Sbjct: 508  HRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRG 545
>sp|Q9W420|SPT6H_DROME Transcription elongation factor SPT6
          Length = 1831

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
 Frame = +3

Query: 126  GDHLPGGGNSTSHRRGLSTTTYFGGESLEVTNGTSYRYRPPPPNRLSRNQNTPQNIRRPR 305
            G   PG G S+SH  G S+T  FG  +   T      +  P     S+      N+  P 
Sbjct: 1605 GSSAPGAGVSSSH-YGSSSTPSFGAINTPYTPSGQTPFMTPYTPHASQTPRYGHNVPSPS 1663

Query: 306  PQSDAAQ-----MSSNTSS--------------VSG-------QLSPQHYQYAEDSEEDV 407
             QS ++Q      SS T S              V G        + P H Q A+++  D 
Sbjct: 1664 SQSSSSQRHHYGSSSGTGSTPRYHDMGGGGGGGVGGGGGSNAYSMQPHHQQRAKEN-LDW 1722

Query: 408  MIPGELMSPTNGQRRSIVESDHRNYASYNQQQQQRIGKSVN 530
             +  +  +    Q+    +S H     ++ QQQ  +G S+N
Sbjct: 1723 QLANDAWARRRPQQHQSHQSYHAQQQHHHSQQQPHMGMSMN 1763
>sp|P09079|HXB5_MOUSE Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1)
          Length = 269

 Score = 37.7 bits (86), Expect = 0.041
 Identities = 30/109 (27%), Positives = 43/109 (39%)
 Frame = +3

Query: 39  YNITEVRQRLNNQSNSNKELTAVGSKMRRGDHLPGGGNSTSHRRGLSTTTYFGGESLEVT 218
           YN   +   +N  S S+    AVG   R     P        R+  S+ +    ESL  T
Sbjct: 47  YNYNGMDLSVNRSSASSSHFGAVGESSRA---FPASAKEPRFRQATSSCSLSSPESLPCT 103

Query: 219 NGTSYRYRPPPPNRLSRNQNTPQNIRRPRPQSDAAQMSSNTSSVSGQLS 365
           NG S+  +P   +    +Q TP +      + D A  SS     + QLS
Sbjct: 104 NGDSHGAKPSASS--PSDQATPASSSANFTEIDEASASSEPEEAASQLS 150
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain 2B (Extracellular matrix
           protein F22)
          Length = 2130

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 6/206 (2%)
 Frame = +3

Query: 147 GNSTSHRRGLSTTTYF------GGESLEVTNGTSYRYRPPPPNRLSRNQNTPQNIRRPRP 308
           GNST+    +ST+          G+   VT+G   R      N++         I+  +P
Sbjct: 118 GNSTTAASAISTSVLSTSIATSAGQVKVVTSGAGGRKYNQEQNKVQLLDTRADKIKDKKP 177

Query: 309 QSDAAQMSSNTSSVSGQLSPQHYQYAEDSEEDVMIPGELMSPTNGQRRSIVESDHRNYAS 488
           +  A + SSN+ S SG  S    +    S+ D +   E       + +S  ES+     S
Sbjct: 178 RKKAVESSSNSDSDSGSSSDTSSEGISSSDSDDLEEDE----EEEEDQSAEESEDDESDS 233

Query: 489 YNQQQQQRIGKSVNNDTRKYQYGLSYPDHLYCKHHRYYNWHSSVSGDSISPDMTNCKTEP 668
            N+   +   K + +   K         H   +  R +     VS         + + +P
Sbjct: 234 ENEAHHENKNKVLMHSGVKDMKTDGQKAHEKSQEKRTHQQIPLVSDSQTHSSFQSQQKQP 293

Query: 669 NLKSDKEGEILSHSTLRSPSLERQLS 746
            + S +   I   S  +  S+ +  S
Sbjct: 294 QVLSQQLPFIFQSSQAKEESVNKHTS 319
>sp|P09067|HXB5_HUMAN Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1)
          Length = 269

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 29/109 (26%), Positives = 42/109 (38%)
 Frame = +3

Query: 39  YNITEVRQRLNNQSNSNKELTAVGSKMRRGDHLPGGGNSTSHRRGLSTTTYFGGESLEVT 218
           YN   +   +N  S S+    AVG   R     P        R+  S+ +    ESL  T
Sbjct: 47  YNYNGMDLSVNRSSASSSHFGAVGESSRA---FPAPAQEPRFRQAASSCSLSSPESLPCT 103

Query: 219 NGTSYRYRPPPPNRLSRNQNTPQNIRRPRPQSDAAQMSSNTSSVSGQLS 365
           NG S+  +P   +    +Q T  +      + D A  SS     + QLS
Sbjct: 104 NGDSHGAKPSASS--PSDQATSASSSANFTEIDEASASSEPEEAASQLS 150
>sp|P28054|RRPP_PI1HC Phosphoprotein (P protein)
          Length = 568

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 8/188 (4%)
 Frame = +3

Query: 3   TRQDNIRPRSGEYN---ITEVRQRLNNQSNSNKELTAVG--SKMRRGDHLPGGGNSTSHR 167
           TR D   P    +    +T+  +++   SN  +E    G   ++RR   L   G S ++ 
Sbjct: 134 TRIDEDSPNERRHQRSVLTDEDRKMAEDSNKREEDQVEGFPEEIRRSTPLSDDGESRTNN 193

Query: 168 RGLSTTTYFGGESLEVTNGTSYRYRPPPPNR---LSRNQNTPQNIRRPRPQSDAAQMSSN 338
            G S  T     S   T  T     P P      L RN+  P  IRR + +S+  Q S  
Sbjct: 194 NGRSMET----SSTHSTRITDVIINPSPELEDAVLQRNKRRPTIIRRNQTRSERTQNSEL 249

Query: 339 TSSVSGQLSPQHYQYAEDSEEDVMIPGELMSPTNGQRRSIVESDHRNYASYNQQQQQRIG 518
             S S     ++    ED        G  + P N +  +  +++H      N ++ +   
Sbjct: 250 HKSTS-----ENSSNLEDHNTKTSPKG--LPPKNEESAATPKNNH------NHRKTKYTM 296

Query: 519 KSVNNDTR 542
            + NN+T+
Sbjct: 297 NNANNNTK 304
>sp|Q8VC48|PEX12_MOUSE Peroxisome assembly protein 12 (Peroxin-12)
          Length = 359

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +3

Query: 54  VRQRLNNQSNSNKELTAVGSKMRRGDHLPGGGNSTSHRRGLSTTTYF--------GGESL 209
           ++QRL   S   + + +VG K++       GG + S   GLS   +F          E+ 
Sbjct: 211 IKQRLVEASAMQEPVRSVGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQ 270

Query: 210 EVTNGTSYRYRPPPPNRLSRNQNTP 284
           E     +    PPPP  L  N ++P
Sbjct: 271 EAIKSLTALPTPPPPVHLDYNSDSP 295
>sp|P37370|VRP1_YEAST Verprolin
          Length = 817

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 17/192 (8%)
 Frame = +3

Query: 225 TSYRYRPPPPNRLSRNQNTPQNIRRPRPQSDAAQMSSNTSSVSGQLSPQHYQYAEDSEED 404
           TS    PPPP  L+ N+ +  +      QS  +  SS+++   G   P   +  +  ++ 
Sbjct: 435 TSVPSAPPPPPTLTTNKPSASS-----KQSKISSSSSSSAVTPGGPLPFLAEIQKKRDDR 489

Query: 405 VMIPGELMSPTNGQRRSIVESDHRNYASYNQQQQQRIGKSVNNDTRKYQYGLSYPDHLYC 584
            ++ G+    T  ++  ++ S     +  +  +   I  S+N   +  Q G+S+ D +  
Sbjct: 490 FVVGGDTGYTTQDKQEDVIGS-----SKDDNVRPSPISPSINPPKQSSQNGMSFLDEIES 544

Query: 585 KHHRYYNWHS----SVSGDSISPDMTNCKTEPNLKS-------------DKEGEILSHST 713
           K H+  + ++        D+++P +      P + S             DK   +L    
Sbjct: 545 KLHKQTSSNAFNAPPPHTDAMAPPLPPSAPPPPITSLPTPTASGDDHTNDKSETVLGMKK 604

Query: 714 LRSPSLERQLSP 749
            ++P+L   + P
Sbjct: 605 AKAPALPGHVPP 616
>sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-kinase) (PtdIns-3-kinase)
           (PI3K)
          Length = 1585

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 11/167 (6%)
 Frame = +3

Query: 69  NNQSNSNKELTAVGSKMRRGDHLPG-----GGNSTSHRRGLSTTTYFGGESLEVTNGTSY 233
           NN SNSN     +        HL G       N+T+     + TT   G S+ +TN  S 
Sbjct: 216 NNNSNSNNNNNGISPSSSPPSHLNGNNNNNNSNNTNSNNTTNATTNSVGFSITMTNSNSL 275

Query: 234 RYRPPPPNRLSRNQNTPQNIRRPRPQSDAAQMSSNTS------SVSGQLSPQHYQYAEDS 395
                    +S+  N  ++    +P S +   +S+        ++SG  S + +   +DS
Sbjct: 276 --------SVSKRMNKFKSWTSSKPTSSSIGFASSPQNNGKPLNISG--SSRFFTSRQDS 325

Query: 396 EEDVMIPGELMSPTNGQRRSIVESDHRNYASYNQQQQQRIGKSVNND 536
           + D++       PT  Q     E+++ N  + N         + NN+
Sbjct: 326 KIDLLKSPSSSPPT--QSDIFNENNNNNNNNNNNNNNNNNNNNNNNN 370
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,014,099
Number of Sequences: 369166
Number of extensions: 2177488
Number of successful extensions: 6925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6887
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)