Planaria EST Database


DrC_01299

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01299
         (327 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P72235|TRES_PIMSR  Trehalose synthase (Maltose alpha-D-gl...    33   0.20 
sp|P39702|VPS8_YEAST  Vacuolar protein sorting-associated pr...    30   2.2  
sp|Q5HEA0|MURA1_STAAC  UDP-N-acetylglucosamine 1-carboxyviny...    29   3.8  
sp|Q6GEX5|MURA1_STAAR  UDP-N-acetylglucosamine 1-carboxyviny...    29   3.8  
sp|Q8CRN6|MURA1_STAES  UDP-N-acetylglucosamine 1-carboxyviny...    28   4.9  
>sp|P72235|TRES_PIMSR Trehalose synthase (Maltose alpha-D-glucosyltransferase)
          Length = 573

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 72  SHYSIQMI*KWLHRHLPKTVLLINQNLWPSLVVCYYSEEEGED 200
           +H  ++ + +++  + P  VLL   N WP+ VV Y+  EE ED
Sbjct: 229 THEMLKRVRRFVDDNYPDRVLLYEANQWPTDVVEYFGPEERED 271
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein VPS8
          Length = 1274

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 153 TNFDLLTKRFLANVCATIFKSFELN 79
           TNFDLL  R     C TIF  F+ N
Sbjct: 913 TNFDLLLSRIGIEKCVTIFSDFDYN 937
>sp|Q5HEA0|MURA1_STAAC UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
 sp|Q931H5|MURA1_STAAM UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
 sp|Q6G7L0|MURA1_STAAS UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
 sp|P84059|MURA1_STAAW UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
 sp|P84058|MURA1_STAAN UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
          Length = 421

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 35  PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
           PGF    +S  M  L  +N  K+V +T  +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVVTETVFENRFMHVAEF 341
>sp|Q6GEX5|MURA1_STAAR UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
          Length = 421

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 35  PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
           PGF    +S  M  L  +N  K+V +T  +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVVTETVFENRFMHVAEF 341
>sp|Q8CRN6|MURA1_STAES UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
 sp|Q5HMC2|MURA1_STAEQ UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
           transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
           transferase 1) (EPT 1)
          Length = 421

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 35  PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
           PGF    +S  M  L  +N  K++ +T  +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVITETVFENRFMHVAEF 341
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,321,721
Number of Sequences: 369166
Number of extensions: 530284
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)