Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B21
(327 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P72235|TRES_PIMSR Trehalose synthase (Maltose alpha-D-gl... 33 0.20
sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated pr... 30 2.2
sp|Q5HEA0|MURA1_STAAC UDP-N-acetylglucosamine 1-carboxyviny... 29 3.8
sp|Q6GEX5|MURA1_STAAR UDP-N-acetylglucosamine 1-carboxyviny... 29 3.8
sp|Q8CRN6|MURA1_STAES UDP-N-acetylglucosamine 1-carboxyviny... 28 4.9
>sp|P72235|TRES_PIMSR Trehalose synthase (Maltose alpha-D-glucosyltransferase)
Length = 573
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 72 SHYSIQMI*KWLHRHLPKTVLLINQNLWPSLVVCYYSEEEGED 200
+H ++ + +++ + P VLL N WP+ VV Y+ EE ED
Sbjct: 229 THEMLKRVRRFVDDNYPDRVLLYEANQWPTDVVEYFGPEERED 271
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein VPS8
Length = 1274
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 153 TNFDLLTKRFLANVCATIFKSFELN 79
TNFDLL R C TIF F+ N
Sbjct: 913 TNFDLLLSRIGIEKCVTIFSDFDYN 937
>sp|Q5HEA0|MURA1_STAAC UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
sp|Q931H5|MURA1_STAAM UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
sp|Q6G7L0|MURA1_STAAS UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
sp|P84059|MURA1_STAAW UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
sp|P84058|MURA1_STAAN UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
Length = 421
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 35 PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
PGF +S M L +N K+V +T +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVVTETVFENRFMHVAEF 341
>sp|Q6GEX5|MURA1_STAAR UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
Length = 421
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 35 PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
PGF +S M L +N K+V +T +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVVTETVFENRFMHVAEF 341
>sp|Q8CRN6|MURA1_STAES UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
sp|Q5HMC2|MURA1_STAEQ UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (Enoylpyruvate
transferase 1) (UDP-N-acetylglucosamine enolpyruvyl
transferase 1) (EPT 1)
Length = 421
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 35 PGFRDFHKSSCMLPLFNSNDLKMVAQTFAKNRFVNKSKF 151
PGF +S M L +N K++ +T +NRF++ ++F
Sbjct: 303 PGFPTDMQSQMMALLLTANGHKVITETVFENRFMHVAEF 341
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,321,721
Number of Sequences: 369166
Number of extensions: 530284
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)