Planaria EST Database


DrC_01292

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01292
         (274 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQQ8|LSM7_MOUSE  U6 snRNA-associated Sm-like protein LSm7    121   6e-28
sp|Q9UK45|LSM7_HUMAN  U6 snRNA-associated Sm-like protein LSm7    120   7e-28
sp|P53905|LSM7_YEAST  U6 snRNA-associated Sm-like protein LSm3     67   1e-11
sp|Q9VXE0|RUXG_DROME  Probable small nuclear ribonucleoprote...    54   9e-08
sp|Q9N4G9|RUXG_CAEEL  Probable small nuclear ribonucleoprote...    54   1e-07
sp|P62308|RUXG_HUMAN  Small nuclear ribonucleoprotein G (snR...    46   3e-05
sp|O82221|RUXG_ARATH  Probable small nuclear ribonucleoprote...    44   9e-05
sp|P24715|RUXG_MEDSA  Probable small nuclear ribonucleoprote...    42   3e-04
sp|P40204|RUXG_YEAST  Small nuclear ribonucleoprotein G (snR...    39   0.003
sp|O74966|RUXG_SCHPO  Probable small nuclear ribonucleoprote...    38   0.006
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7
          Length = 103

 Score =  121 bits (303), Expect = 6e-28
 Identities = 58/81 (71%), Positives = 66/81 (81%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           YIDK IRVKF GGRE SGILKG DPLLN+VLD T EY+RDP+D  K+TE+TR LGLVVC+
Sbjct: 18  YIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCR 77

Query: 186 GPTVEVIFPSDGMEPISNPFV 248
           G +V +I P DGME I NPFV
Sbjct: 78  GTSVVLICPQDGMEAIPNPFV 98
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7
          Length = 103

 Score =  120 bits (302), Expect = 7e-28
 Identities = 57/81 (70%), Positives = 66/81 (81%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           YIDK IRVKF GGRE SGILKG DPLLN+VLD T EY+RDP+D  K+TE+TR LGLVVC+
Sbjct: 18  YIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCR 77

Query: 186 GPTVEVIFPSDGMEPISNPFV 248
           G +V +I P DGME I NPF+
Sbjct: 78  GTSVVLICPQDGMEAIPNPFI 98
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3
          Length = 107

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPED---TTKITENTRDLGLV 176
           Y D +IRVK  GG+ V G+LKG D L+N+VLD T EY+ +P+D   T  I++N R LGL 
Sbjct: 25  YKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLT 84

Query: 177 VCKGPTVEVIFPSDGME 227
           V +G  +  +  ++G +
Sbjct: 85  VIRGTILVSLSSAEGSD 101
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 76

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 28/67 (41%), Positives = 45/67 (67%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           Y+DKR+ +K  GGR V+GIL+G DP +N+VLD T E   + +D TK      ++G+VV +
Sbjct: 12  YMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE---ECKDNTK-----NNIGMVVIR 63

Query: 186 GPTVEVI 206
           G ++ ++
Sbjct: 64  GNSIVMV 70
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 77

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 42/71 (59%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           Y+DK + +K  G R VSGIL+G DP +NMV+D   EY +D          + +LG+ V +
Sbjct: 12  YMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGMTVIR 63

Query: 186 GPTVEVIFPSD 218
           G +V ++ P +
Sbjct: 64  GNSVVIMEPKE 74
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
 sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
          Length = 76

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           ++DK++ +K  GGR V GIL+G DP +N+V+D   E     +          ++G+VV +
Sbjct: 12  FMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVIR 63

Query: 186 GPTV 197
           G ++
Sbjct: 64  GNSI 67
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 80

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 24/76 (31%), Positives = 44/76 (57%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           Y+DK++++K    R V+G L+G D  +N+V+D T E   +  D T       D+G+VV +
Sbjct: 13  YMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV--NGNDKT-------DIGMVVIR 63

Query: 186 GPTVEVIFPSDGMEPI 233
           G ++  +   + +EP+
Sbjct: 64  GNSIVTV---EALEPV 76
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 81

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 43/78 (55%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           Y+DK++++     R + G L+G D  +N+V+D T E   + ++         D+G+VV +
Sbjct: 13  YMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN---------DIGMVVIR 63

Query: 186 GPTVEVIFPSDGMEPISN 239
           G +V  +   + +EP+ N
Sbjct: 64  GNSVVTV---EALEPVVN 78
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
          Length = 77

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGL-VVC 182
           Y+DK+I +   G R+V+GIL+G D  LN+VLD   E   + ED      N   LGL  V 
Sbjct: 10  YMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGLQTVI 63

Query: 183 KGPTV 197
           +G ++
Sbjct: 64  RGNSI 68
>sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 77

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 24/73 (32%), Positives = 39/73 (53%)
 Frame = +3

Query: 6   YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
           Y+D+++ V+  G R+V G+L+G D  LN+VL+ + E   D E           +G V  +
Sbjct: 12  YLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKV--------KIGSVAIR 63

Query: 186 GPTVEVIFPSDGM 224
           G +V +I   D M
Sbjct: 64  GNSVIMIETLDKM 76
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,290,040
Number of Sequences: 369166
Number of extensions: 595856
Number of successful extensions: 1459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)