Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A04
(274 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 121 6e-28
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 120 7e-28
sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3 67 1e-11
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprote... 54 9e-08
sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprote... 54 1e-07
sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snR... 46 3e-05
sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprote... 44 9e-05
sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprote... 42 3e-04
sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snR... 39 0.003
sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprote... 38 0.006
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 121 bits (303), Expect = 6e-28
Identities = 58/81 (71%), Positives = 66/81 (81%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
YIDK IRVKF GGRE SGILKG DPLLN+VLD T EY+RDP+D K+TE+TR LGLVVC+
Sbjct: 18 YIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCR 77
Query: 186 GPTVEVIFPSDGMEPISNPFV 248
G +V +I P DGME I NPFV
Sbjct: 78 GTSVVLICPQDGMEAIPNPFV 98
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 120 bits (302), Expect = 7e-28
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
YIDK IRVKF GGRE SGILKG DPLLN+VLD T EY+RDP+D K+TE+TR LGLVVC+
Sbjct: 18 YIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCR 77
Query: 186 GPTVEVIFPSDGMEPISNPFV 248
G +V +I P DGME I NPF+
Sbjct: 78 GTSVVLICPQDGMEAIPNPFI 98
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3
Length = 107
Score = 67.0 bits (162), Expect = 1e-11
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPED---TTKITENTRDLGLV 176
Y D +IRVK GG+ V G+LKG D L+N+VLD T EY+ +P+D T I++N R LGL
Sbjct: 25 YKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLT 84
Query: 177 VCKGPTVEVIFPSDGME 227
V +G + + ++G +
Sbjct: 85 VIRGTILVSLSSAEGSD 101
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 76
Score = 54.3 bits (129), Expect = 9e-08
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
Y+DKR+ +K GGR V+GIL+G DP +N+VLD T E + +D TK ++G+VV +
Sbjct: 12 YMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE---ECKDNTK-----NNIGMVVIR 63
Query: 186 GPTVEVI 206
G ++ ++
Sbjct: 64 GNSIVMV 70
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 77
Score = 53.9 bits (128), Expect = 1e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
Y+DK + +K G R VSGIL+G DP +NMV+D EY +D + +LG+ V +
Sbjct: 12 YMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGMTVIR 63
Query: 186 GPTVEVIFPSD 218
G +V ++ P +
Sbjct: 64 GNSVVIMEPKE 74
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
Length = 76
Score = 45.8 bits (107), Expect = 3e-05
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
++DK++ +K GGR V GIL+G DP +N+V+D E + ++G+VV +
Sbjct: 12 FMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVIR 63
Query: 186 GPTV 197
G ++
Sbjct: 64 GNSI 67
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 80
Score = 44.3 bits (103), Expect = 9e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
Y+DK++++K R V+G L+G D +N+V+D T E + D T D+G+VV +
Sbjct: 13 YMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV--NGNDKT-------DIGMVVIR 63
Query: 186 GPTVEVIFPSDGMEPI 233
G ++ + + +EP+
Sbjct: 64 GNSIVTV---EALEPV 76
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 81
Score = 42.4 bits (98), Expect = 3e-04
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
Y+DK++++ R + G L+G D +N+V+D T E + ++ D+G+VV +
Sbjct: 13 YMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN---------DIGMVVIR 63
Query: 186 GPTVEVIFPSDGMEPISN 239
G +V + + +EP+ N
Sbjct: 64 GNSVVTV---EALEPVVN 78
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
Length = 77
Score = 39.3 bits (90), Expect = 0.003
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGL-VVC 182
Y+DK+I + G R+V+GIL+G D LN+VLD E + ED N LGL V
Sbjct: 10 YMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGLQTVI 63
Query: 183 KGPTV 197
+G ++
Sbjct: 64 RGNSI 68
>sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 77
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +3
Query: 6 YIDKRIRVKFAGGREVSGILKGCDPLLNMVLDATTEYLRDPEDTTKITENTRDLGLVVCK 185
Y+D+++ V+ G R+V G+L+G D LN+VL+ + E D E +G V +
Sbjct: 12 YLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKV--------KIGSVAIR 63
Query: 186 GPTVEVIFPSDGM 224
G +V +I D M
Sbjct: 64 GNSVIMIETLDKM 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,290,040
Number of Sequences: 369166
Number of extensions: 595856
Number of successful extensions: 1459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)