Planaria EST Database


DrC_01291

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01291
         (695 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53947|YNF8_YEAST  Hypothetical 35.0 kDa protein in ARP5-...    32   1.6  
sp|Q9PCX7|HEM3_XYLFA  Porphobilinogen deaminase (PBG) (Hydro...    30   4.7  
sp|Q87CC9|HEM3_XYLFT  Porphobilinogen deaminase (PBG) (Hydro...    30   4.7  
sp|Q60841|RELN_MOUSE  Reelin precursor (Reeler protein)            30   8.0  
>sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-OMP2 intergenic region
          Length = 316

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
 Frame = +3

Query: 63  RLNSNKPQ--------DDKINSFVDGHKEKRNSLYLSPVVSDSCNT 176
           +LN N+PQ        + KINS    HK  ++SL L PV S + NT
Sbjct: 245 KLNLNRPQRAASPERKEKKINSMEGYHKRNQSSLGLIPVASATSNT 290
>sp|Q9PCX7|HEM3_XYLFA Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
           (HMBS) (Pre-uroporphyrinogen synthase)
          Length = 305

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +3

Query: 363 LSNSTSNIDPPRLSLDKLEL---RSDSTCSQFSSEDCPPSMQPPHSQALELS*FDITNKQ 533
           L  S + I    L L +LEL   R D+ C+  S +D P  ++PP   A  LS  D  +  
Sbjct: 47  LDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADAL 106

Query: 534 IH--FLDIFDFNIYL*IASASMR 596
           I   +L +    I   +A++S+R
Sbjct: 107 ISNVYLSLESLPIGARVATSSLR 129
>sp|Q87CC9|HEM3_XYLFT Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
           (HMBS) (Pre-uroporphyrinogen synthase)
          Length = 305

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +3

Query: 363 LSNSTSNIDPPRLSLDKLEL---RSDSTCSQFSSEDCPPSMQPPHSQALELS*FDITNKQ 533
           L  S + I    L L +LEL   R D+ C+  S +D P  ++PP   A  LS  D  +  
Sbjct: 47  LDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADAL 106

Query: 534 IH--FLDIFDFNIYL*IASASMR 596
           I   +L +    I   +A++S+R
Sbjct: 107 ISNVYLSLESLPIGARVATSSLR 129
>sp|Q60841|RELN_MOUSE Reelin precursor (Reeler protein)
          Length = 3461

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 147  SPVVSDSCNTDVILPHSKSYDADLSHLVINGIS 245
            SP  +DSCN+D+  PH+      L + V NGI+
Sbjct: 3339 SPAQTDSCNSDLSGPHTVDKAVLLQYSVNNGIT 3371
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,357,876
Number of Sequences: 369166
Number of extensions: 1348137
Number of successful extensions: 2953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2953
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)