Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A03
(695 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-... 32 1.6
sp|Q9PCX7|HEM3_XYLFA Porphobilinogen deaminase (PBG) (Hydro... 30 4.7
sp|Q87CC9|HEM3_XYLFT Porphobilinogen deaminase (PBG) (Hydro... 30 4.7
sp|Q60841|RELN_MOUSE Reelin precursor (Reeler protein) 30 8.0
>sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-OMP2 intergenic region
Length = 316
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Frame = +3
Query: 63 RLNSNKPQ--------DDKINSFVDGHKEKRNSLYLSPVVSDSCNT 176
+LN N+PQ + KINS HK ++SL L PV S + NT
Sbjct: 245 KLNLNRPQRAASPERKEKKINSMEGYHKRNQSSLGLIPVASATSNT 290
>sp|Q9PCX7|HEM3_XYLFA Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
(HMBS) (Pre-uroporphyrinogen synthase)
Length = 305
Score = 30.4 bits (67), Expect = 4.7
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 363 LSNSTSNIDPPRLSLDKLEL---RSDSTCSQFSSEDCPPSMQPPHSQALELS*FDITNKQ 533
L S + I L L +LEL R D+ C+ S +D P ++PP A LS D +
Sbjct: 47 LDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADAL 106
Query: 534 IH--FLDIFDFNIYL*IASASMR 596
I +L + I +A++S+R
Sbjct: 107 ISNVYLSLESLPIGARVATSSLR 129
>sp|Q87CC9|HEM3_XYLFT Porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase)
(HMBS) (Pre-uroporphyrinogen synthase)
Length = 305
Score = 30.4 bits (67), Expect = 4.7
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 363 LSNSTSNIDPPRLSLDKLEL---RSDSTCSQFSSEDCPPSMQPPHSQALELS*FDITNKQ 533
L S + I L L +LEL R D+ C+ S +D P ++PP A LS D +
Sbjct: 47 LDRSLAAIGGKGLFLKELELAMLRGDADCAVHSLKDVPMDLEPPFMLAAVLSRDDPADAL 106
Query: 534 IH--FLDIFDFNIYL*IASASMR 596
I +L + I +A++S+R
Sbjct: 107 ISNVYLSLESLPIGARVATSSLR 129
>sp|Q60841|RELN_MOUSE Reelin precursor (Reeler protein)
Length = 3461
Score = 29.6 bits (65), Expect = 8.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 147 SPVVSDSCNTDVILPHSKSYDADLSHLVINGIS 245
SP +DSCN+D+ PH+ L + V NGI+
Sbjct: 3339 SPAQTDSCNSDLSGPHTVDKAVLLQYSVNNGIT 3371
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,357,876
Number of Sequences: 369166
Number of extensions: 1348137
Number of successful extensions: 2953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2953
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)