Planaria EST Database


DrC_01289

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01289
         (521 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96DT5|DYH11_HUMAN  Ciliary dynein heavy chain 11 (Axonem...    31   2.0  
sp|Q8NE79|POPD1_HUMAN  Blood vessel epicardial substance (hB...    30   2.7  
sp|Q9ES83|POPD1_MOUSE  Blood vessel epicardial substance (Po...    29   6.0  
sp|Q6FQJ2|ATG3_CANGA  Autophagy-related protein 3 (Autophagy...    29   7.8  
>sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy chain 11)
          Length = 4523

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 306  NPDTPRSFLAKVSETANILKINPNDESEKSYFIMN 202
            N  TP+SFL ++S   N+LK   N+ SEK   ++N
Sbjct: 3074 NYTTPKSFLEQISLFKNLLKKKQNEVSEKKERLVN 3108
>sp|Q8NE79|POPD1_HUMAN Blood vessel epicardial substance (hBVES) (Popeye domain containing
           protein 1) (Popeye protein 1)
          Length = 360

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 507 SAERLVINNSKFLSEIPRYFIEDIFSFLIGKDGSRKIYTYIDVFRIQKKLNNTSYQ 340
           S ERL      FL   P  F+ +IF +LIGKD + K+Y+  D     KK     +Q
Sbjct: 231 SRERLTY----FLESEP--FLYEIFRYLIGKDITNKLYSLNDPTLNDKKAKKLEHQ 280
>sp|Q9ES83|POPD1_MOUSE Blood vessel epicardial substance (Popeye domain containing protein
           1) (Popeye protein 1)
          Length = 358

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -3

Query: 507 SAERLVINNSKFLSEIPRYFIEDIFSFLIGKDGSRKIYTYIDVFRIQKKLNNTSYQ 340
           S ERL      FL   P  F+ +IF +LIGKD + K+Y+  D     KK+     Q
Sbjct: 231 SRERLTY----FLESEP--FLYEIFRYLIGKDITNKLYSLNDPTLNDKKVKKLEPQ 280
>sp|Q6FQJ2|ATG3_CANGA Autophagy-related protein 3 (Autophagy-related E2-like conjugation
           enzyme ATG3)
          Length = 309

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 81  DNSMISNEDVSILKYYDAFITY 16
           D+ +++N+   +L+YYD FITY
Sbjct: 142 DDDIVANKTNEMLRYYDLFITY 163
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,449,063
Number of Sequences: 369166
Number of extensions: 826896
Number of successful extensions: 1623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)