Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01289
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonem... 31 2.0
sp|Q8NE79|POPD1_HUMAN Blood vessel epicardial substance (hB... 30 2.7
sp|Q9ES83|POPD1_MOUSE Blood vessel epicardial substance (Po... 29 6.0
sp|Q6FQJ2|ATG3_CANGA Autophagy-related protein 3 (Autophagy... 29 7.8
>sp|Q96DT5|DYH11_HUMAN Ciliary dynein heavy chain 11 (Axonemal beta dynein heavy chain 11)
Length = 4523
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 306 NPDTPRSFLAKVSETANILKINPNDESEKSYFIMN 202
N TP+SFL ++S N+LK N+ SEK ++N
Sbjct: 3074 NYTTPKSFLEQISLFKNLLKKKQNEVSEKKERLVN 3108
>sp|Q8NE79|POPD1_HUMAN Blood vessel epicardial substance (hBVES) (Popeye domain containing
protein 1) (Popeye protein 1)
Length = 360
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = -3
Query: 507 SAERLVINNSKFLSEIPRYFIEDIFSFLIGKDGSRKIYTYIDVFRIQKKLNNTSYQ 340
S ERL FL P F+ +IF +LIGKD + K+Y+ D KK +Q
Sbjct: 231 SRERLTY----FLESEP--FLYEIFRYLIGKDITNKLYSLNDPTLNDKKAKKLEHQ 280
>sp|Q9ES83|POPD1_MOUSE Blood vessel epicardial substance (Popeye domain containing protein
1) (Popeye protein 1)
Length = 358
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = -3
Query: 507 SAERLVINNSKFLSEIPRYFIEDIFSFLIGKDGSRKIYTYIDVFRIQKKLNNTSYQ 340
S ERL FL P F+ +IF +LIGKD + K+Y+ D KK+ Q
Sbjct: 231 SRERLTY----FLESEP--FLYEIFRYLIGKDITNKLYSLNDPTLNDKKVKKLEPQ 280
>sp|Q6FQJ2|ATG3_CANGA Autophagy-related protein 3 (Autophagy-related E2-like conjugation
enzyme ATG3)
Length = 309
Score = 28.9 bits (63), Expect = 7.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 81 DNSMISNEDVSILKYYDAFITY 16
D+ +++N+ +L+YYD FITY
Sbjct: 142 DDDIVANKTNEMLRYYDLFITY 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,449,063
Number of Sequences: 369166
Number of extensions: 826896
Number of successful extensions: 1623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)