Planaria EST Database


DrC_01287

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01287
         (411 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36417|GBF_DICDI  G-box binding factor (GBF)                    34   0.099
sp|P14250|GUN3_FIBSU  Endoglucanase 3 precursor (Endo-1,4-be...    33   0.22 
sp|P18106|FPS_DROME  Tyrosine-protein kinase Fps85D (dFer)         32   0.64 
sp|P26329|VSI4_TRYBB  Variant surface glycoprotein ILTAT 1.2...    31   0.84 
sp|P55879|GLI3_CHICK  Zinc finger protein GLI3                     31   0.84 
sp|P73334|RPOC2_SYNY3  DNA-directed RNA polymerase beta' cha...    31   1.1  
sp|Q8MX88|CRM_DROSE  Cramped protein                               30   1.9  
sp|P14351|ENV_FOAMV  Env polyprotein (Coat polyprotein)            30   1.9  
sp|Q9WTQ2|PODXL_RAT  Podocalyxin precursor                         30   1.9  
sp|Q59S66|IPL1_CANAL  Spindle assembly checkpoint kinase (Au...    30   2.4  
>sp|P36417|GBF_DICDI G-box binding factor (GBF)
          Length = 708

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = +3

Query: 99  NEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAPSILTSDFHD 278
           + P K SN        +   + TPS++ NNNNN                 PS+L S    
Sbjct: 522 SSPKKKSNITPITTSSTSSSSSTPSIINNNNNNNANSSKNNTPKKQLSPPPSVLQSPSSS 581

Query: 279 SSSTPPRQ 302
           S S  P Q
Sbjct: 582 SISQSPLQ 589
>sp|P14250|GUN3_FIBSU Endoglucanase 3 precursor (Endo-1,4-beta-glucanase) (Cellulase)
           (EG3)
          Length = 658

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 99  NEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAP---SILTSD 269
           N P  G+ N V  +     PT + +V+   +++  +++P TL     ++ P     L  D
Sbjct: 35  NNPVPGAENQVPVSSSDMSPTSSDAVIDPTSSSAAVVDPSTLPAEGPITMPEGLGTLVDD 94

Query: 270 FHDSSS 287
           F D  +
Sbjct: 95  FEDGDN 100
>sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer)
          Length = 1325

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 147 SCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAPSILTSDFHDSSSTPPRQDDSSQDA 323
           S CPT + S  +NNNNN K     +   +H  S  +I+TS    + +T      S +++
Sbjct: 750 SDCPTNSSSSSSNNNNNNKNTSSNS---NHSASQSTIITSTITTTITTTTTTTPSKENS 805
>sp|P26329|VSI4_TRYBB Variant surface glycoprotein ILTAT 1.24 precursor (VSG)
          Length = 514

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 69  DTKDCVLYCENEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNN 197
           D  D   YC +   +GSN     A Q C P   P ++T ++ N
Sbjct: 135 DATDGTTYCLSASGQGSNGNAAMASQGCKPLALPELLTEDSYN 177
>sp|P55879|GLI3_CHICK Zinc finger protein GLI3
          Length = 663

 Score = 31.2 bits (69), Expect = 0.84
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 24  AEFDEHAEDSNSNNSDTKDCVLYCENEPTKGSNNVVCAA----KQSCCPTKTPSVVTNNN 191
           ++  E + ++NS     +DC+   + +  K  N+V+C +    + SC    +P   TNNN
Sbjct: 421 SKVSEESPEANSTTRSMEDCL---QVKTIKTENSVMCQSSPGGQSSCSSEPSPLGSTNNN 477

Query: 192 NNG 200
           ++G
Sbjct: 478 DSG 480
>sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1317

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 72  CLNCYYWNLLHVHQIQLG 19
           C NCY W+L H H++ LG
Sbjct: 293 CQNCYGWSLAHGHKVDLG 310
>sp|Q8MX88|CRM_DROSE Cramped protein
          Length = 975

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 111 KGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEP 215
           + +N  +   K +  P+  PS  TNNNNN    EP
Sbjct: 306 RSANQRLHEEKSAIFPSSLPSTATNNNNNNNETEP 340
>sp|P14351|ENV_FOAMV Env polyprotein (Coat polyprotein)
          Length = 985

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
 Frame = +3

Query: 60  NNSDTKDCVLYCEN--------EPTKGSNNVVCAAKQSC-CPTKTPSVVTNN 188
           N+SDT DC ++ E          P K  + +V A+   C  P   PS+VT N
Sbjct: 779 NSSDTSDCPVWAEAVKEPFVQVNPLKNGSYLVLASSTDCQIPPYVPSIVTVN 830
>sp|Q9WTQ2|PODXL_RAT Podocalyxin precursor
          Length = 485

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 54  NSNNSDTKDCVLYCENEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFH 233
           N N +DT D     +N+    +N    A  +S     TP+ ++ ++ + K     T + +
Sbjct: 27  NGNKTDTSDITSIDQNQDKPATNQPSNATPKSSVQPPTPTSISTSSPDPK----ATQSSN 82

Query: 234 HQVSAPSILTSDFHDSS-STPPRQDDSSQ 317
             V+  S  T+D   SS ST P   +S Q
Sbjct: 83  SSVTTTSDSTTDRTSSSTSTVPTTSNSGQ 111
>sp|Q59S66|IPL1_CANAL Spindle assembly checkpoint kinase (Aurora kinase)
          Length = 530

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +3

Query: 162 KTPSVVTNNNNNGKLLEP----QTLAFHHQVSAPSILTSDFHDSSSTPPR 299
           +T +  T N NN K+L P     T+ F    S+ S  T+    SS T P+
Sbjct: 185 RTTTTATQNTNNNKILNPSLSSSTIRFSTVSSSTSSSTTSSSSSSHTSPK 234
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,696,709
Number of Sequences: 369166
Number of extensions: 912571
Number of successful extensions: 2488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2479
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)