Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P16
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36417|GBF_DICDI G-box binding factor (GBF) 34 0.099
sp|P14250|GUN3_FIBSU Endoglucanase 3 precursor (Endo-1,4-be... 33 0.22
sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer) 32 0.64
sp|P26329|VSI4_TRYBB Variant surface glycoprotein ILTAT 1.2... 31 0.84
sp|P55879|GLI3_CHICK Zinc finger protein GLI3 31 0.84
sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase beta' cha... 31 1.1
sp|Q8MX88|CRM_DROSE Cramped protein 30 1.9
sp|P14351|ENV_FOAMV Env polyprotein (Coat polyprotein) 30 1.9
sp|Q9WTQ2|PODXL_RAT Podocalyxin precursor 30 1.9
sp|Q59S66|IPL1_CANAL Spindle assembly checkpoint kinase (Au... 30 2.4
>sp|P36417|GBF_DICDI G-box binding factor (GBF)
Length = 708
Score = 34.3 bits (77), Expect = 0.099
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +3
Query: 99 NEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAPSILTSDFHD 278
+ P K SN + + TPS++ NNNNN PS+L S
Sbjct: 522 SSPKKKSNITPITTSSTSSSSSTPSIINNNNNNNANSSKNNTPKKQLSPPPSVLQSPSSS 581
Query: 279 SSSTPPRQ 302
S S P Q
Sbjct: 582 SISQSPLQ 589
>sp|P14250|GUN3_FIBSU Endoglucanase 3 precursor (Endo-1,4-beta-glucanase) (Cellulase)
(EG3)
Length = 658
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 99 NEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAP---SILTSD 269
N P G+ N V + PT + +V+ +++ +++P TL ++ P L D
Sbjct: 35 NNPVPGAENQVPVSSSDMSPTSSDAVIDPTSSSAAVVDPSTLPAEGPITMPEGLGTLVDD 94
Query: 270 FHDSSS 287
F D +
Sbjct: 95 FEDGDN 100
>sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer)
Length = 1325
Score = 31.6 bits (70), Expect = 0.64
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 147 SCCPTKTPSVVTNNNNNGKLLEPQTLAFHHQVSAPSILTSDFHDSSSTPPRQDDSSQDA 323
S CPT + S +NNNNN K + +H S +I+TS + +T S +++
Sbjct: 750 SDCPTNSSSSSSNNNNNNKNTSSNS---NHSASQSTIITSTITTTITTTTTTTPSKENS 805
>sp|P26329|VSI4_TRYBB Variant surface glycoprotein ILTAT 1.24 precursor (VSG)
Length = 514
Score = 31.2 bits (69), Expect = 0.84
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 69 DTKDCVLYCENEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNN 197
D D YC + +GSN A Q C P P ++T ++ N
Sbjct: 135 DATDGTTYCLSASGQGSNGNAAMASQGCKPLALPELLTEDSYN 177
>sp|P55879|GLI3_CHICK Zinc finger protein GLI3
Length = 663
Score = 31.2 bits (69), Expect = 0.84
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 24 AEFDEHAEDSNSNNSDTKDCVLYCENEPTKGSNNVVCAA----KQSCCPTKTPSVVTNNN 191
++ E + ++NS +DC+ + + K N+V+C + + SC +P TNNN
Sbjct: 421 SKVSEESPEANSTTRSMEDCL---QVKTIKTENSVMCQSSPGGQSSCSSEPSPLGSTNNN 477
Query: 192 NNG 200
++G
Sbjct: 478 DSG 480
>sp|P73334|RPOC2_SYNY3 DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1317
Score = 30.8 bits (68), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 72 CLNCYYWNLLHVHQIQLG 19
C NCY W+L H H++ LG
Sbjct: 293 CQNCYGWSLAHGHKVDLG 310
>sp|Q8MX88|CRM_DROSE Cramped protein
Length = 975
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 111 KGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEP 215
+ +N + K + P+ PS TNNNNN EP
Sbjct: 306 RSANQRLHEEKSAIFPSSLPSTATNNNNNNNETEP 340
>sp|P14351|ENV_FOAMV Env polyprotein (Coat polyprotein)
Length = 985
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Frame = +3
Query: 60 NNSDTKDCVLYCEN--------EPTKGSNNVVCAAKQSC-CPTKTPSVVTNN 188
N+SDT DC ++ E P K + +V A+ C P PS+VT N
Sbjct: 779 NSSDTSDCPVWAEAVKEPFVQVNPLKNGSYLVLASSTDCQIPPYVPSIVTVN 830
>sp|Q9WTQ2|PODXL_RAT Podocalyxin precursor
Length = 485
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 54 NSNNSDTKDCVLYCENEPTKGSNNVVCAAKQSCCPTKTPSVVTNNNNNGKLLEPQTLAFH 233
N N +DT D +N+ +N A +S TP+ ++ ++ + K T + +
Sbjct: 27 NGNKTDTSDITSIDQNQDKPATNQPSNATPKSSVQPPTPTSISTSSPDPK----ATQSSN 82
Query: 234 HQVSAPSILTSDFHDSS-STPPRQDDSSQ 317
V+ S T+D SS ST P +S Q
Sbjct: 83 SSVTTTSDSTTDRTSSSTSTVPTTSNSGQ 111
>sp|Q59S66|IPL1_CANAL Spindle assembly checkpoint kinase (Aurora kinase)
Length = 530
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 162 KTPSVVTNNNNNGKLLEP----QTLAFHHQVSAPSILTSDFHDSSSTPPR 299
+T + T N NN K+L P T+ F S+ S T+ SS T P+
Sbjct: 185 RTTTTATQNTNNNKILNPSLSSSTIRFSTVSSSTSSSTTSSSSSSHTSPK 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,696,709
Number of Sequences: 369166
Number of extensions: 912571
Number of successful extensions: 2488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2479
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)