Planaria EST Database


DrC_01275

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01275
         (730 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O73672|PSA2_CARAU  Proteasome subunit alpha type 2             313   2e-85
sp|P17220|PSA2_RAT  Proteasome subunit alpha type 2 (Proteas...   310   3e-84
sp|P49722|PSA2_MOUSE  Proteasome subunit alpha type 2 (Prote...   310   3e-84
sp|P25787|PSA2_HUMAN  Proteasome subunit alpha type 2 (Prote...   309   6e-84
sp|P24495|PSA2_XENLA  Proteasome subunit alpha type 2 (Prote...   308   1e-83
sp|P40301|PSA2_DROME  Proteasome subunit alpha type 2 (Prote...   299   6e-81
sp|Q8L4A7|PSA2B_ARATH  Proteasome subunit alpha type 2-B (20...   270   3e-72
sp|O23708|PSA2A_ARATH  Proteasome subunit alpha type 2-A (20...   268   8e-72
sp|Q9LSU2|PSA2_ORYSA  Proteasome subunit alpha type 2 (20S p...   268   1e-71
sp|Q27488|PSA2_CAEEL  Proteasome subunit alpha type 2 (Prote...   267   2e-71
>sp|O73672|PSA2_CARAU Proteasome subunit alpha type 2
          Length = 234

 Score =  313 bits (803), Expect = 2e-85
 Identities = 160/229 (69%), Positives = 184/229 (80%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIEYAL AV  GAPSVGIKA NG VLA EKK  S+L DE S+ +I+
Sbjct: 7   SFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            IT +IG VYSG+ PDYR+LV++A K+A  Y L +   I   QL + +++VMQEYTQSGG
Sbjct: 67  PITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLIAGWD   DRP+LFQ DPSG YF WKATA+GK+  NGK+FLEKRYN+ LEL
Sbjct: 127 VRPFGVSLLIAGWDE--DRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAI 689
           EDAIHT+ILTLKESFEG MTEENIEV IC + GFR L  +EV+DYL AI
Sbjct: 185 EDAIHTAILTLKESFEGQMTEENIEVGICNEAGFRRLSPAEVKDYLAAI 233
>sp|P17220|PSA2_RAT Proteasome subunit alpha type 2 (Proteasome component C3)
           (Macropain subunit C3) (Multicatalytic endopeptidase
           complex subunit C3)
          Length = 234

 Score =  310 bits (794), Expect = 3e-84
 Identities = 158/229 (68%), Positives = 182/229 (79%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIEYAL AV GGAPSVGIKA NG VLA EKK  S+L DE S+ +++
Sbjct: 7   SFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            IT +IG VYSG+ PDYR+LV +A K+A  Y L +   I   QL + +++VMQEYTQSGG
Sbjct: 67  PITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLI GW+    RP+LFQ DPSG YF WKATA+GKN  NGK+FLEKRYN+ LEL
Sbjct: 127 VRPFGVSLLICGWNE--GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAI 689
           EDAIHT+ILTLKESFEG MTE+NIEV IC + GFR L  +EVRDYL AI
Sbjct: 185 EDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVRDYLAAI 233
>sp|P49722|PSA2_MOUSE Proteasome subunit alpha type 2 (Proteasome component C3)
           (Macropain subunit C3) (Multicatalytic endopeptidase
           complex subunit C3)
          Length = 234

 Score =  310 bits (794), Expect = 3e-84
 Identities = 158/229 (68%), Positives = 182/229 (79%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIEYAL AV GGAPSVGIKA NG VLA EKK  S+L DE S+ +++
Sbjct: 7   SFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            IT +IG VYSG+ PDYR+LV +A K+A  Y L +   I   QL + +++VMQEYTQSGG
Sbjct: 67  PITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLI GW+    RP+LFQ DPSG YF WKATA+GKN  NGK+FLEKRYN+ LEL
Sbjct: 127 VRPFGVSLLICGWNE--GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAI 689
           EDAIHT+ILTLKESFEG MTE+NIEV IC + GFR L  +EVRDYL AI
Sbjct: 185 EDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVRDYLAAI 233
>sp|P25787|PSA2_HUMAN Proteasome subunit alpha type 2 (Proteasome component C3)
           (Macropain subunit C3) (Multicatalytic endopeptidase
           complex subunit C3)
          Length = 234

 Score =  309 bits (791), Expect = 6e-84
 Identities = 157/229 (68%), Positives = 182/229 (79%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIEYAL AV GGAPSVGIKA NG VLA EKK  S+L DE S+ +++
Sbjct: 7   SFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            IT +IG VYSG+ PDYR+LV +A K+A  Y L +   I   QL + +++VMQEYTQSGG
Sbjct: 67  PITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLI GW+    RP+LFQ DPSG YF WKATA+GKN  NGK+FLEKRYN+ LEL
Sbjct: 127 VRPFGVSLLICGWNE--GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAI 689
           EDAIHT+ILTLKESFEG MTE+NIEV IC + GFR L  +EV+DYL AI
Sbjct: 185 EDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAI 233
>sp|P24495|PSA2_XENLA Proteasome subunit alpha type 2 (Proteasome component C3)
           (Macropain subunit C3) (Multicatalytic endopeptidase
           complex subunit C3) (xC3)
          Length = 234

 Score =  308 bits (789), Expect = 1e-83
 Identities = 157/229 (68%), Positives = 182/229 (79%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIEYAL AV  GAPSVGIKA NG VLA EKK  S+L DE S  +++
Sbjct: 7   SFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            IT +IG VYSG+ PDYR+LV++A K+A  Y L +   I   QL + +++VMQEYTQSGG
Sbjct: 67  PITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLIAGWD    RP+LFQ DPSG YF WKATA+GKN  NGK+FLEKRYN+ LEL
Sbjct: 127 VRPFGVSLLIAGWDE--GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAI 689
           EDAIHT+ILTLKESFEG MTE+NIEV IC + GF+ L  +EV+DYL AI
Sbjct: 185 EDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFKRLTPAEVKDYLAAI 233
>sp|P40301|PSA2_DROME Proteasome subunit alpha type 2 (Proteasome 25 kDa subunit)
           (PROS-Dm25)
          Length = 234

 Score =  299 bits (765), Expect = 6e-81
 Identities = 147/230 (63%), Positives = 180/230 (78%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQ+EYAL AV GGAPSVGI A NG V+A E K  S L ++ S+ R++
Sbjct: 7   SFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVE 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            I  +IG VYSG+ PDYRLLVK+A KIA  Y L++   I   QL + ++ +MQEYTQSGG
Sbjct: 67  MIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLI GWDN  DRP+L+Q DPSG YF WKATA+GKN+ NGK+FLEKRY++ LEL
Sbjct: 127 VRPFGVSLLICGWDN--DRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYLTAIP 692
           +DA+HT+ILTLKE FEG MT +NIE+ IC   GF+ LD + ++DYL +IP
Sbjct: 185 DDAVHTAILTLKEGFEGKMTADNIEIGICDQNGFQRLDPASIKDYLASIP 234
>sp|Q8L4A7|PSA2B_ARATH Proteasome subunit alpha type 2-B (20S proteasome alpha subunit
           B-2)
          Length = 235

 Score =  270 bits (690), Expect = 3e-72
 Identities = 137/230 (59%), Positives = 177/230 (76%), Gaps = 1/230 (0%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA NG V+A EKK  S+L+DE S+++IQ
Sbjct: 7   SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQ 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            +T NIG VYSG+ PD+R+LV+K+ K A+ YL  +   I   QL +  + VMQE+TQSGG
Sbjct: 67  HLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLL+AG+D++   P L+Q DPSG+YF WKA+A+GKN  N K+FLEKRY + +EL
Sbjct: 127 VRPFGVSLLVAGYDDK--GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVA-ICTDKGFRILDQSEVRDYLTAI 689
           +DAIHT+ILTLKE FEG ++ +NIE+  I TDK FR+L  +E+ DYL  +
Sbjct: 185 DDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEIDDYLAEV 234
>sp|O23708|PSA2A_ARATH Proteasome subunit alpha type 2-A (20S proteasome alpha subunit B)
           (Proteasome component 3)
          Length = 235

 Score =  268 bits (686), Expect = 8e-72
 Identities = 136/230 (59%), Positives = 176/230 (76%), Gaps = 1/230 (0%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA NG V+A EKK  S+L+DE S+++IQ
Sbjct: 7   SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQ 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            +T NIG VYSG+ PD+R+LV+K+ K A+ YL  +   I   QL +  + VMQE+TQSGG
Sbjct: 67  HLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLL+AG+D++   P L+Q DPSG+YF WKA+A+GKN  N K+FLEKRY + +EL
Sbjct: 127 VRPFGVSLLVAGYDDK--GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVA-ICTDKGFRILDQSEVRDYLTAI 689
           +DAIHT+ILTLKE FEG ++ +NIE+  I  DK FR+L  +E+ DYL  +
Sbjct: 185 DDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEIDDYLAEV 234
>sp|Q9LSU2|PSA2_ORYSA Proteasome subunit alpha type 2 (20S proteasome alpha subunit B)
           (20S proteasome subunit alpha-2)
          Length = 235

 Score =  268 bits (685), Expect = 1e-71
 Identities = 134/230 (58%), Positives = 177/230 (76%), Gaps = 1/230 (0%)
 Frame = +3

Query: 3   SFSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQ 182
           SFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA NG V+A EKK  S+L+DETS+++IQ
Sbjct: 7   SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQ 66

Query: 183 EITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGG 362
            +T NIG VYSG+ PD+R+LV+K+ K A  Y   +   I   QL +  +AVMQE+TQSGG
Sbjct: 67  SLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGG 126

Query: 363 VRPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLEL 542
           VRPFGVSLLIAG+D+  + P L+Q DPSG+YF WKA+A+GKN  N K+FLEKRY + +EL
Sbjct: 127 VRPFGVSLLIAGYDD--NGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMEL 184

Query: 543 EDAIHTSILTLKESFEGVMTEENIEVAIC-TDKGFRILDQSEVRDYLTAI 689
           +DAIHT+ILTLKE +EG ++  NIE+ I  +D+ F++L  +E++D+L  +
Sbjct: 185 DDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEV 234
>sp|Q27488|PSA2_CAEEL Proteasome subunit alpha type 2 (Proteasome subunit alpha 2)
          Length = 231

 Score =  267 bits (682), Expect = 2e-71
 Identities = 135/225 (60%), Positives = 169/225 (75%)
 Frame = +3

Query: 6   FSLTTFSPSGKLVQIEYALKAVDGGAPSVGIKACNGAVLAVEKKFNSLLIDETSIKRIQE 185
           FSLTTFSPSGKL+QIEYAL AV  G PSVG++A +G VLA E    S+L D+    ++++
Sbjct: 7   FSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQP--KVEQ 63

Query: 186 ITTNIGFVYSGLSPDYRLLVKKAIKIADDYLLSHGNLISPEQLAKSISAVMQEYTQSGGV 365
           I+ +IG VYSG+ PD+R+LVKKA KIA +Y + +G  +   QL   I+AVMQEYTQSGGV
Sbjct: 64  ISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGV 123

Query: 366 RPFGVSLLIAGWDNEIDRPFLFQCDPSGTYFPWKATALGKNSGNGKSFLEKRYNDKLELE 545
           RPFG SLLIAGWD    RP LFQCDPSG YF WKATALGKN  N K+FLEKR+++ LEL+
Sbjct: 124 RPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELD 183

Query: 546 DAIHTSILTLKESFEGVMTEENIEVAICTDKGFRILDQSEVRDYL 680
           D IHT++LTL+ESF+  M E N+EVA+C   GF  L + +V D+L
Sbjct: 184 DGIHTALLTLRESFDVGMNENNVEVAVCNSTGFHRLTKQQVHDHL 228
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,455,857
Number of Sequences: 369166
Number of extensions: 1645837
Number of successful extensions: 4828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4645
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)