Planaria EST Database


DrC_01269

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01269
         (263 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V818|MTH3_DROME  Probable G-protein coupled receptor Mt...    29   3.8  
sp|Q9V817|MTH4_DROME  Probable G-protein coupled receptor Mt...    29   3.8  
sp|Q9MLJ4|CYB_LATCO  Cytochrome b                                  28   8.4  
sp|O88495|MTR1L_MOUSE  Melatonin-related receptor (G protein...    28   8.4  
>sp|Q9V818|MTH3_DROME Probable G-protein coupled receptor Mth-like 3 precursor
           (Methuselah-like 3 protein)
          Length = 511

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   ICQIIFAFICYFFITVNMYKLDIHYCASVNLL 100
           IC +   F+ YFF+ +N++K    +C +   L
Sbjct: 248 ICYLASLFLGYFFLVLNVWKYSSGFCVTAGFL 279
>sp|Q9V817|MTH4_DROME Probable G-protein coupled receptor Mth-like 4 precursor
           (Methuselah-like 4 protein)
          Length = 480

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   ICQIIFAFICYFFITVNMYKLDIHYCASVNLL 100
           IC +   F+ YFF+ +N++K    +C +   L
Sbjct: 245 ICYLASLFLGYFFLVLNVWKYSSGFCVTAGFL 276
>sp|Q9MLJ4|CYB_LATCO Cytochrome b
          Length = 371

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 32  CYFFITVNMYKLDIHYCASVNLLIDSVL 115
           C F  T   + L IHY A++NL   SV+
Sbjct: 32  CLFLQTTTGFFLAIHYTANINLAFSSVI 59
>sp|O88495|MTR1L_MOUSE Melatonin-related receptor (G protein-coupled receptor 50) (H9)
          Length = 583

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 203 TSHNCNYALYIKINTSKPSTVTRFYFVP 120
           TSH  + A YIK  TS P+T T  Y  P
Sbjct: 472 TSHPTSMAGYIKSGTSHPATTTVDYLEP 499
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,446,870
Number of Sequences: 369166
Number of extensions: 349360
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)