Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L10
(263 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V818|MTH3_DROME Probable G-protein coupled receptor Mt... 29 3.8
sp|Q9V817|MTH4_DROME Probable G-protein coupled receptor Mt... 29 3.8
sp|Q9MLJ4|CYB_LATCO Cytochrome b 28 8.4
sp|O88495|MTR1L_MOUSE Melatonin-related receptor (G protein... 28 8.4
>sp|Q9V818|MTH3_DROME Probable G-protein coupled receptor Mth-like 3 precursor
(Methuselah-like 3 protein)
Length = 511
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 5 ICQIIFAFICYFFITVNMYKLDIHYCASVNLL 100
IC + F+ YFF+ +N++K +C + L
Sbjct: 248 ICYLASLFLGYFFLVLNVWKYSSGFCVTAGFL 279
>sp|Q9V817|MTH4_DROME Probable G-protein coupled receptor Mth-like 4 precursor
(Methuselah-like 4 protein)
Length = 480
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 5 ICQIIFAFICYFFITVNMYKLDIHYCASVNLL 100
IC + F+ YFF+ +N++K +C + L
Sbjct: 245 ICYLASLFLGYFFLVLNVWKYSSGFCVTAGFL 276
>sp|Q9MLJ4|CYB_LATCO Cytochrome b
Length = 371
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 32 CYFFITVNMYKLDIHYCASVNLLIDSVL 115
C F T + L IHY A++NL SV+
Sbjct: 32 CLFLQTTTGFFLAIHYTANINLAFSSVI 59
>sp|O88495|MTR1L_MOUSE Melatonin-related receptor (G protein-coupled receptor 50) (H9)
Length = 583
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 203 TSHNCNYALYIKINTSKPSTVTRFYFVP 120
TSH + A YIK TS P+T T Y P
Sbjct: 472 TSHPTSMAGYIKSGTSHPATTTVDYLEP 499
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,446,870
Number of Sequences: 369166
Number of extensions: 349360
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)