Planaria EST Database


DrC_01267

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01267
         (288 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34956|QOX1_BACSU  Quinol oxidase polypeptide I (Quinol o...    35   0.069
sp|Q59297|CYB6_CHLLT  Cytochrome bc complex cytochrome b sub...    31   0.77 
sp|Q58007|Y587_METJA  Hypothetical protein MJ0587                  31   1.0  
sp|Q9F721|CYB6_CHLTE  Cytochrome bc complex cytochrome b sub...    31   1.0  
sp|Q8D339|ARNT_WIGBR  Undecaprenyl phosphate-alpha-4-amino-4...    30   1.7  
sp|P25356|BPH1_YEAST  Beige protein homolog 1                      29   2.9  
sp|Q7YKQ3|MATK_GRAOF  Maturase K (Intron maturase)                 28   5.0  
sp|P33509|NU3M_ANOQU  NADH-ubiquinone oxidoreductase chain 3...    28   6.5  
sp|P34850|NU3M_ANOGA  NADH-ubiquinone oxidoreductase chain 3...    28   6.5  
sp|O26929|Y841_METTH  Hypothetical transport protein MTH841        28   6.5  
>sp|P34956|QOX1_BACSU Quinol oxidase polypeptide I (Quinol oxidase aa3-600, subunit qoxB)
           (Oxidase aa(3)-600 subunit 1)
          Length = 649

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = -3

Query: 268 KYNLINFLLRFFINMIII-VIFSCFYNIL----RNQLHHLNFELLPNWFFWYIFVIGFNF 104
           +Y+   FL+  F  ++I   +F+CF   +    +   H LN E +  WFFW IF+IGFN 
Sbjct: 405 QYHNTYFLVSHFHYVLIAGTVFACFAGFIFWYPKMFGHKLN-ERIGKWFFW-IFMIGFNI 462

Query: 103 LF 98
            F
Sbjct: 463 CF 464
>sp|Q59297|CYB6_CHLLT Cytochrome bc complex cytochrome b subunit
          Length = 428

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 256 INFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
           I +L+ F + + + V+F     +  N L      + P W+FW  F +  +F FE  E
Sbjct: 313 IGWLIGFALLIYLAVMFPWEIGVKANPLSPAPLGIKPEWYFWAQFQLLKDFKFEGGE 369
>sp|Q58007|Y587_METJA Hypothetical protein MJ0587
          Length = 153

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 259 LINFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRENT 80
           +I  +  +  +++ I+I+S F+ I  N    L   LLP    W+  +IG    +   EN 
Sbjct: 16  VITLIGYWIASILAIIIYSMFFKIETNTF--LLCLLLPTPIIWFNILIGMGLTYRCMENL 73

Query: 79  WVTGKDK 59
            +  K K
Sbjct: 74  TIYDKHK 80
>sp|Q9F721|CYB6_CHLTE Cytochrome bc complex cytochrome b subunit
          Length = 428

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 256 INFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
           I +L+ F + + + V+F     +  N L      + P W+FW  F +  +F FE  E
Sbjct: 311 IGWLIGFALLVYLAVMFPWEIGVKANPLSPAPVGIKPEWYFWAQFQLLKDFKFEGGE 367
>sp|Q8D339|ARNT_WIGBR Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
           transferase (Undecaprenyl phosphate-alpha-L-Ara4N
           transferase) (4-amino-4-deoxy-L-arabinose lipid A
           transferase)
          Length = 562

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
 Frame = -3

Query: 277 FI*KYNLINFLLRFFINMII--IVIFSCFYNILRNQLHHLNFELL--------------- 149
           F+ K N+   ++  F +++I  ++IF   Y I   +   + + +                
Sbjct: 206 FLTKININKTIIHCFFSLLISILIIFPWIYKISYLEKDFIRYFIFIEHIQRFIGENAQHK 265

Query: 148 -PNWFFWYIFVIG----FNFLFESRENTWVTGKDKQ 56
            P W+++ IF+IG      FLF +    W T K+K+
Sbjct: 266 SPFWYYFPIFIIGCLPWSGFLFSTLNLAWNTRKNKK 301
>sp|P25356|BPH1_YEAST Beige protein homolog 1
          Length = 2167

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 59   FIFASYPCVFSAFKQKIKSNN---KNVPEKPIWKQFKIQMM*LVSQNIVK 199
            F F+SY C+     Q  KS+    KNV +  + + FKI +M L+  N +K
Sbjct: 1011 FYFSSYTCLLHCVIQIDKSSFYHFKNVSKSQLLQDFKICIMNLIYSNTLK 1060
>sp|Q7YKQ3|MATK_GRAOF Maturase K (Intron maturase)
          Length = 510

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = +3

Query: 27  YRSKYLSEYSCLSLPVTHVFSLLSNKKLNPITKMYQKNQF 146
           Y    LSE SC        FSLL  K+L  IT+MYQ+N F
Sbjct: 37  YNRSILSENSCYEKK----FSLLIVKRL--ITRMYQQNHF 70
>sp|P33509|NU3M_ANOQU NADH-ubiquinone oxidoreductase chain 3 (NADH dehydrogenase subunit
           3)
          Length = 117

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 250 FLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNW-----FFWYIFVIG 113
           F LRFF+  II +IF     +L   +  +    L NW     FF +I +IG
Sbjct: 53  FALRFFLIAIIFLIFDVEIALLLPMVMIIKTSNLMNWTMTSFFFIFILLIG 103
>sp|P34850|NU3M_ANOGA NADH-ubiquinone oxidoreductase chain 3 (NADH dehydrogenase subunit
           3)
          Length = 117

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 250 FLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNW-----FFWYIFVIG 113
           F LRFF+  II +IF     +L   +  +    L NW     FF +I +IG
Sbjct: 53  FSLRFFLIAIIFLIFDVEIALLLPMIMIIKTSNLMNWTITSLFFIFILLIG 103
>sp|O26929|Y841_METTH Hypothetical transport protein MTH841
          Length = 343

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = -3

Query: 244 LRFFINMIIIVIFSC-------FYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
           L+ F+ +++I++ +        F  ILRN     NF ++   FFW +  +   FL   R+
Sbjct: 174 LKDFLGIVLIILGAVYLLTEGDFSTILRNVAVTGNFLVMAAAFFWSLDTVLSKFLSRKRD 233

Query: 85  NTWVTG 68
             +++G
Sbjct: 234 LIFISG 239
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,718,206
Number of Sequences: 369166
Number of extensions: 577984
Number of successful extensions: 1856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)