Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_K21
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34956|QOX1_BACSU Quinol oxidase polypeptide I (Quinol o... 35 0.069
sp|Q59297|CYB6_CHLLT Cytochrome bc complex cytochrome b sub... 31 0.77
sp|Q58007|Y587_METJA Hypothetical protein MJ0587 31 1.0
sp|Q9F721|CYB6_CHLTE Cytochrome bc complex cytochrome b sub... 31 1.0
sp|Q8D339|ARNT_WIGBR Undecaprenyl phosphate-alpha-4-amino-4... 30 1.7
sp|P25356|BPH1_YEAST Beige protein homolog 1 29 2.9
sp|Q7YKQ3|MATK_GRAOF Maturase K (Intron maturase) 28 5.0
sp|P33509|NU3M_ANOQU NADH-ubiquinone oxidoreductase chain 3... 28 6.5
sp|P34850|NU3M_ANOGA NADH-ubiquinone oxidoreductase chain 3... 28 6.5
sp|O26929|Y841_METTH Hypothetical transport protein MTH841 28 6.5
>sp|P34956|QOX1_BACSU Quinol oxidase polypeptide I (Quinol oxidase aa3-600, subunit qoxB)
(Oxidase aa(3)-600 subunit 1)
Length = 649
Score = 34.7 bits (78), Expect = 0.069
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = -3
Query: 268 KYNLINFLLRFFINMIII-VIFSCFYNIL----RNQLHHLNFELLPNWFFWYIFVIGFNF 104
+Y+ FL+ F ++I +F+CF + + H LN E + WFFW IF+IGFN
Sbjct: 405 QYHNTYFLVSHFHYVLIAGTVFACFAGFIFWYPKMFGHKLN-ERIGKWFFW-IFMIGFNI 462
Query: 103 LF 98
F
Sbjct: 463 CF 464
>sp|Q59297|CYB6_CHLLT Cytochrome bc complex cytochrome b subunit
Length = 428
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 256 INFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
I +L+ F + + + V+F + N L + P W+FW F + +F FE E
Sbjct: 313 IGWLIGFALLIYLAVMFPWEIGVKANPLSPAPLGIKPEWYFWAQFQLLKDFKFEGGE 369
>sp|Q58007|Y587_METJA Hypothetical protein MJ0587
Length = 153
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -3
Query: 259 LINFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRENT 80
+I + + +++ I+I+S F+ I N L LLP W+ +IG + EN
Sbjct: 16 VITLIGYWIASILAIIIYSMFFKIETNTF--LLCLLLPTPIIWFNILIGMGLTYRCMENL 73
Query: 79 WVTGKDK 59
+ K K
Sbjct: 74 TIYDKHK 80
>sp|Q9F721|CYB6_CHLTE Cytochrome bc complex cytochrome b subunit
Length = 428
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -3
Query: 256 INFLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
I +L+ F + + + V+F + N L + P W+FW F + +F FE E
Sbjct: 311 IGWLIGFALLVYLAVMFPWEIGVKANPLSPAPVGIKPEWYFWAQFQLLKDFKFEGGE 367
>sp|Q8D339|ARNT_WIGBR Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase (Undecaprenyl phosphate-alpha-L-Ara4N
transferase) (4-amino-4-deoxy-L-arabinose lipid A
transferase)
Length = 562
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Frame = -3
Query: 277 FI*KYNLINFLLRFFINMII--IVIFSCFYNILRNQLHHLNFELL--------------- 149
F+ K N+ ++ F +++I ++IF Y I + + + +
Sbjct: 206 FLTKININKTIIHCFFSLLISILIIFPWIYKISYLEKDFIRYFIFIEHIQRFIGENAQHK 265
Query: 148 -PNWFFWYIFVIG----FNFLFESRENTWVTGKDKQ 56
P W+++ IF+IG FLF + W T K+K+
Sbjct: 266 SPFWYYFPIFIIGCLPWSGFLFSTLNLAWNTRKNKK 301
>sp|P25356|BPH1_YEAST Beige protein homolog 1
Length = 2167
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 59 FIFASYPCVFSAFKQKIKSNN---KNVPEKPIWKQFKIQMM*LVSQNIVK 199
F F+SY C+ Q KS+ KNV + + + FKI +M L+ N +K
Sbjct: 1011 FYFSSYTCLLHCVIQIDKSSFYHFKNVSKSQLLQDFKICIMNLIYSNTLK 1060
>sp|Q7YKQ3|MATK_GRAOF Maturase K (Intron maturase)
Length = 510
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 27 YRSKYLSEYSCLSLPVTHVFSLLSNKKLNPITKMYQKNQF 146
Y LSE SC FSLL K+L IT+MYQ+N F
Sbjct: 37 YNRSILSENSCYEKK----FSLLIVKRL--ITRMYQQNHF 70
>sp|P33509|NU3M_ANOQU NADH-ubiquinone oxidoreductase chain 3 (NADH dehydrogenase subunit
3)
Length = 117
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -3
Query: 250 FLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNW-----FFWYIFVIG 113
F LRFF+ II +IF +L + + L NW FF +I +IG
Sbjct: 53 FALRFFLIAIIFLIFDVEIALLLPMVMIIKTSNLMNWTMTSFFFIFILLIG 103
>sp|P34850|NU3M_ANOGA NADH-ubiquinone oxidoreductase chain 3 (NADH dehydrogenase subunit
3)
Length = 117
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -3
Query: 250 FLLRFFINMIIIVIFSCFYNILRNQLHHLNFELLPNW-----FFWYIFVIG 113
F LRFF+ II +IF +L + + L NW FF +I +IG
Sbjct: 53 FSLRFFLIAIIFLIFDVEIALLLPMIMIIKTSNLMNWTITSLFFIFILLIG 103
>sp|O26929|Y841_METTH Hypothetical transport protein MTH841
Length = 343
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 244 LRFFINMIIIVIFSC-------FYNILRNQLHHLNFELLPNWFFWYIFVIGFNFLFESRE 86
L+ F+ +++I++ + F ILRN NF ++ FFW + + FL R+
Sbjct: 174 LKDFLGIVLIILGAVYLLTEGDFSTILRNVAVTGNFLVMAAAFFWSLDTVLSKFLSRKRD 233
Query: 85 NTWVTG 68
+++G
Sbjct: 234 LIFISG 239
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,718,206
Number of Sequences: 369166
Number of extensions: 577984
Number of successful extensions: 1856
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1854
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)