Planaria EST Database


DrC_01261

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01261
         (371 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8MT06|GNL3_DROME  Guanine nucleotide binding protein-lik...    54   1e-07
sp|Q21086|GNL3_CAEEL  Putative guanine nucleotide binding pr...    47   2e-05
sp|Q6TGJ8|NOG2_CRYGA  Nucleolar GTP-binding protein 2              43   2e-04
sp|Q6FWS1|NOG2_CANGA  Nucleolar GTP-binding protein 2              43   2e-04
sp|Q13823|NOG2_HUMAN  Nucleolar GTP-binding protein 2 (Autoa...    42   6e-04
sp|Q99LH1|NOG2_MOUSE  Nucleolar GTP-binding protein 2              40   0.001
sp|Q6DRP2|GNL3_BRARE  Guanine nucleotide binding protein-lik...    40   0.002
sp|P40010|NUG1_YEAST  Nuclear GTP-binding protein NUG1 (Nucl...    39   0.004
sp|Q8J109|NOG2_CRYNV  Nucleolar GTP-binding protein 2              39   0.005
sp|Q6P4W5|GNL3_XENTR  Guanine nucleotide binding protein-lik...    37   0.011
>sp|Q8MT06|GNL3_DROME Guanine nucleotide binding protein-like 3 homolog (Nucleostemin
           homolog)
          Length = 581

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/64 (40%), Positives = 36/64 (56%)
 Frame = +3

Query: 3   TVTEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEA 182
           T  EF    A+RM    K GVP++  A+  ++NDWN GKI YCT+PP   E   + +  +
Sbjct: 374 TFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEGQSVHISAS 433

Query: 183 AVSS 194
            V S
Sbjct: 434 IVHS 437
>sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding protein-like 3 homolog
           (Nucleostemin-1)
          Length = 556

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +3

Query: 3   TVTEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPP 143
           +V +F+   A R+  L++G  P++  A+ +++NDWN GK+ Y T PP
Sbjct: 368 SVDQFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPP 414
>sp|Q6TGJ8|NOG2_CRYGA Nucleolar GTP-binding protein 2
          Length = 731

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +3

Query: 9   TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSE 155
           T  + A A +   L KGG P+   A+  ++NDW +GKI +   PPA SE
Sbjct: 455 TVILTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKIPFFVAPPAKSE 503
>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2
          Length = 494

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 9   TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEAAV 188
           T+F+   A +   L KGG P+    S +++ND+N+GKI +   PP   E    +LDE  V
Sbjct: 425 TDFIEMLARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVIPPEKEEDKKRKLDEEEV 484

Query: 189 SSVTF-KPKD 215
            S    K KD
Sbjct: 485 KSAKMQKVKD 494
>sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 (Autoantigen NGP-1)
          Length = 731

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 22/72 (30%), Positives = 39/72 (54%)
 Frame = +3

Query: 12  EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEAAVS 191
           +F+   A R   L KGG P+L+     ++NDW +G+I +  +PP +  +V  +L     S
Sbjct: 420 DFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPPNAEPLVAPQL--LPSS 477

Query: 192 SVTFKPKDGKNS 227
           S+   P+  +N+
Sbjct: 478 SLEVVPEAAQNN 489
>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2
          Length = 728

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 12  EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLEL 173
           +F+   A R   L KGG P++   S  ++NDW +G+I +  +PP +    D +L
Sbjct: 420 DFLEKLALRTGKLLKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPNAEIPTDSQL 473
>sp|Q6DRP2|GNL3_BRARE Guanine nucleotide binding protein-like 3 (Nucleostemin-like
           protein)
          Length = 561

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 12  EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPP 143
           EF+  FA +   L+KGGV +  LA+   +NDW   K++Y +  P
Sbjct: 371 EFLTTFAMKHGLLQKGGVADTELAATTFLNDWTGAKLSYYSRVP 414
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 (Nuclear GTPase 1)
          Length = 520

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 15  FMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASS 152
           F++  A +   L KGG+PNL  A + ++NDW  GKI     P  S+
Sbjct: 414 FLIHVARKRGRLGKGGIPNLASAGLSVLNDWRDGKILGWVLPNTSA 459
>sp|Q8J109|NOG2_CRYNV Nucleolar GTP-binding protein 2
          Length = 720

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 9   TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSE 155
           T  + A A +   L KGG P+   A+  ++NDW +GK+ +   PP   E
Sbjct: 445 TFVLTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKVPFFVAPPTKPE 493
>sp|Q6P4W5|GNL3_XENTR Guanine nucleotide binding protein-like 3 (Nucleostemin-like
           protein)
          Length = 548

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 12  EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEV 158
           E +   A R   LKKGGVP+   A   L NDW   ++ Y  +PP S  V
Sbjct: 355 ECVTLLAQRRGLLKKGGVPDTEAAGRLLFNDWMGVRMKYYCQPPDSPGV 403
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,819,421
Number of Sequences: 369166
Number of extensions: 730245
Number of successful extensions: 1859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)