Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J19
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8MT06|GNL3_DROME Guanine nucleotide binding protein-lik... 54 1e-07
sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding pr... 47 2e-05
sp|Q6TGJ8|NOG2_CRYGA Nucleolar GTP-binding protein 2 43 2e-04
sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2 43 2e-04
sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 (Autoa... 42 6e-04
sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2 40 0.001
sp|Q6DRP2|GNL3_BRARE Guanine nucleotide binding protein-lik... 40 0.002
sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 (Nucl... 39 0.004
sp|Q8J109|NOG2_CRYNV Nucleolar GTP-binding protein 2 39 0.005
sp|Q6P4W5|GNL3_XENTR Guanine nucleotide binding protein-lik... 37 0.011
>sp|Q8MT06|GNL3_DROME Guanine nucleotide binding protein-like 3 homolog (Nucleostemin
homolog)
Length = 581
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/64 (40%), Positives = 36/64 (56%)
Frame = +3
Query: 3 TVTEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEA 182
T EF A+RM K GVP++ A+ ++NDWN GKI YCT+PP E + + +
Sbjct: 374 TFEEFFAKKAARMGKFLKKGVPDVVAAARSVLNDWNTGKIKYCTQPPEVQEGQSVHISAS 433
Query: 183 AVSS 194
V S
Sbjct: 434 IVHS 437
>sp|Q21086|GNL3_CAEEL Putative guanine nucleotide binding protein-like 3 homolog
(Nucleostemin-1)
Length = 556
Score = 46.6 bits (109), Expect = 2e-05
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +3
Query: 3 TVTEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPP 143
+V +F+ A R+ L++G P++ A+ +++NDWN GK+ Y T PP
Sbjct: 368 SVDQFLAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPP 414
>sp|Q6TGJ8|NOG2_CRYGA Nucleolar GTP-binding protein 2
Length = 731
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 9 TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSE 155
T + A A + L KGG P+ A+ ++NDW +GKI + PPA SE
Sbjct: 455 TVILTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKIPFFVAPPAKSE 503
>sp|Q6FWS1|NOG2_CANGA Nucleolar GTP-binding protein 2
Length = 494
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 9 TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEAAV 188
T+F+ A + L KGG P+ S +++ND+N+GKI + PP E +LDE V
Sbjct: 425 TDFIEMLARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVIPPEKEEDKKRKLDEEEV 484
Query: 189 SSVTF-KPKD 215
S K KD
Sbjct: 485 KSAKMQKVKD 494
>sp|Q13823|NOG2_HUMAN Nucleolar GTP-binding protein 2 (Autoantigen NGP-1)
Length = 731
Score = 41.6 bits (96), Expect = 6e-04
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +3
Query: 12 EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLELDEAAVS 191
+F+ A R L KGG P+L+ ++NDW +G+I + +PP + +V +L S
Sbjct: 420 DFLEKLAFRTGKLLKGGEPDLQTVGKMVLNDWQRGRIPFFVKPPNAEPLVAPQL--LPSS 477
Query: 192 SVTFKPKDGKNS 227
S+ P+ +N+
Sbjct: 478 SLEVVPEAAQNN 489
>sp|Q99LH1|NOG2_MOUSE Nucleolar GTP-binding protein 2
Length = 728
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 12 EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEVVDLEL 173
+F+ A R L KGG P++ S ++NDW +G+I + +PP + D +L
Sbjct: 420 DFLEKLALRTGKLLKGGEPDMLTVSKMVLNDWQRGRIPFFVKPPNAEIPTDSQL 473
>sp|Q6DRP2|GNL3_BRARE Guanine nucleotide binding protein-like 3 (Nucleostemin-like
protein)
Length = 561
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 12 EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPP 143
EF+ FA + L+KGGV + LA+ +NDW K++Y + P
Sbjct: 371 EFLTTFAMKHGLLQKGGVADTELAATTFLNDWTGAKLSYYSRVP 414
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 (Nuclear GTPase 1)
Length = 520
Score = 38.9 bits (89), Expect = 0.004
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 15 FMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASS 152
F++ A + L KGG+PNL A + ++NDW GKI P S+
Sbjct: 414 FLIHVARKRGRLGKGGIPNLASAGLSVLNDWRDGKILGWVLPNTSA 459
>sp|Q8J109|NOG2_CRYNV Nucleolar GTP-binding protein 2
Length = 720
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 9 TEFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSE 155
T + A A + L KGG P+ A+ ++NDW +GK+ + PP E
Sbjct: 445 TFVLTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKVPFFVAPPTKPE 493
>sp|Q6P4W5|GNL3_XENTR Guanine nucleotide binding protein-like 3 (Nucleostemin-like
protein)
Length = 548
Score = 37.4 bits (85), Expect = 0.011
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 12 EFMVAFASRMCPLKKGGVPNLRLASVKLINDWNKGKIAYCTEPPASSEV 158
E + A R LKKGGVP+ A L NDW ++ Y +PP S V
Sbjct: 355 ECVTLLAQRRGLLKKGGVPDTEAAGRLLFNDWMGVRMKYYCQPPDSPGV 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,819,421
Number of Sequences: 369166
Number of extensions: 730245
Number of successful extensions: 1859
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)