Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01254
(183 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04693|RSE1_YEAST Pre-mRNA splicing factor RSE1 (RNA spl... 28 6.5
sp|Q9PR17|Y127_UREPA Hypothetical protein UU127 28 8.4
>sp|Q04693|RSE1_YEAST Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi transport
factor 1) (Spliceosome associated protein 130)
Length = 1361
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Frame = -2
Query: 164 INCLQIVFKIVKHQPTDLYICGAHIRLLIFK-------LSQFIESLHQTNFIS 27
I+C+ Q L IC RLL +K LS IE LHQT IS
Sbjct: 977 IDCVSAAIIDFTRQADHLIICAGDKRLLTYKILVNKDKLSFDIELLHQTEIIS 1029
>sp|Q9PR17|Y127_UREPA Hypothetical protein UU127
Length = 101
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 158 CLQIVFKIVKHQPTDLYICGAHIRLLIFKLSQFIESLHQTNFISKSFD 15
C+ + F I+ D Y G +++ L F++ LHQ N I SF+
Sbjct: 14 CILLAFAIIFGIEIDYYHQGDYLKYL-----NFLDKLHQYNKIDNSFE 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,711,846
Number of Sequences: 369166
Number of extensions: 280503
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)