Planaria EST Database


DrC_01247

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01247
         (891 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    97   8e-20
sp|P59391|ARGC1_LACPL  N-acetyl-gamma-glutamyl-phosphate red...    32   2.4  
sp|Q12469|SKM1_YEAST  Serine/threonine-protein kinase SKM1 (...    32   3.1  
sp|Q8K9K6|FLGE_BUCAP  Flagellar hook protein flgE                  31   4.1  
sp|Q33821|NU4LM_ASTPE  NADH-ubiquinone oxidoreductase chain ...    31   4.1  
sp|Q9ZD15|SODF_RICPR  Superoxide dismutase [Mn/Fe]                 31   5.3  
sp|Q9ZJJ1|SYI_HELPJ  Isoleucyl-tRNA synthetase (Isoleucine--...    31   5.3  
sp|P51178|PLCD1_HUMAN  1-phosphatidylinositol-4,5-bisphospha...    30   6.9  
sp|P09157|SODF_ECOLI  Superoxide dismutase [Fe]                    30   6.9  
sp|P15554|NU4LM_STRPU  NADH-ubiquinone oxidoreductase chain ...    30   9.0  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 43/98 (43%), Positives = 65/98 (66%)
 Frame = -1

Query: 384 LLHDNARPHIANVTKTAILTFGWEVLPHPPYSTNLAPSNFHIFRSLSNSLRGVSFNNEVE 205
           L+  + +PH+A  T   +   GW VLPHPPYS +LAP+++H+F SLS+ +R   F++E  
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211

Query: 204 LRFWLDDFFESRPEDFYRRGIEKLIERWEEVVNNSGQY 91
           L+  L  FF SR  DF+ RGI  L  +W++VV+ +G+Y
Sbjct: 212 LKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 249

 Score = 63.5 bits (153), Expect = 7e-10
 Identities = 35/95 (36%), Positives = 51/95 (53%)
 Frame = -1

Query: 888 PDEFDEERVNQLLHEDVRQTT*ELAKRMGCSQMTIVRHFGSMGKAQKLGAWVPHLLSENN 709
           P E +EE + +L+ E+ R +  E+ +++ C   TI  H G +G   KLG WVPH LS + 
Sbjct: 69  PVELNEEDLVKLVEEEPRLSLREMEEKLECCHSTIACHLGRLGFTSKLGIWVPHELSASQ 128

Query: 708 KNQRSTISASLLARHRATDGHKKRFLYRIITGDEK 604
           K  R  +   LL   R  D     +L  ++TGDEK
Sbjct: 129 KLTRVNVCTQLLTFRRKFD-----WLNNLVTGDEK 158
>sp|P59391|ARGC1_LACPL N-acetyl-gamma-glutamyl-phosphate reductase 1 (AGPR 1)
           (N-acetyl-glutamate semialdehyde dehydrogenase 1) (NAGSA
           dehydrogenase 1)
          Length = 343

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
 Frame = -1

Query: 312 VLPHPPYSTNLAPSNFHIFRSLSNSLRGVS---------FNNEVELRFWLDDFFESRPED 160
           +L HP ++     S  +  + +   L+G +         FN+  +L F LD  F + P  
Sbjct: 24  LLNHPNFNVTFISSEKYAGKPVEKMLKGFAHNGHSHNLRFNHLDDLPFDLDFVFSALPTG 83

Query: 159 FYRRGIEKLIERWEEVVNNSGQY 91
              + +EK++E+   + N SG +
Sbjct: 84  VLPKYVEKILEKTSLIFNVSGDF 106
>sp|Q12469|SKM1_YEAST Serine/threonine-protein kinase SKM1 (Protein kinase 75490 D)
          Length = 655

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 357 IANVTKTAILTFGWEVLPHPPYSTNLAPSNFHIFRSLSNSLRGVSFNNEVELRFWLDDFF 178
           I NV++  +    +E+L       N++P N + + S S     +S   E +L  WLD  F
Sbjct: 55  ITNVSRIQLKQNCFEILRATDQKENISPINSYFYESNSKRSIFISTRTERDLHGWLDAIF 114

Query: 177 ESRP 166
              P
Sbjct: 115 AKCP 118
>sp|Q8K9K6|FLGE_BUCAP Flagellar hook protein flgE
          Length = 409

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -1

Query: 318 WEVLPHPPYSTNLAPSNFHIFRSLSNSLRGV--SFNNEVELRFWLDDFF---ESRPEDFY 154
           ++++ H  YS  +  S   I   + N   GV    N +++L    D FF   +S+   +Y
Sbjct: 40  FDIVSHSFYSNQIIKSGVGISNLVQNFSDGVLVQTNRDLDLGIVQDGFFRVLDSKGYVYY 99

Query: 153 RRGIEKLIERWEEVVNNSGQY 91
            R    L+++ + +VN  G Y
Sbjct: 100 TRNGHFLLDKNKNIVNGQGMY 120
>sp|Q33821|NU4LM_ASTPE NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
           4L)
          Length = 98

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 396 IVDRVHLLNIKLCVHCLILIE*FVMNNAFPVPPNTTSFSVDENLFLLVV 542
           +++R+H L+I LC+  L+LI  F+    + +  NTT F +  NL LL +
Sbjct: 20  LINRLHFLSILLCLE-LLLISLFLSLTVWAINANTT-FLLTNNLILLTL 66
>sp|Q9ZD15|SODF_RICPR Superoxide dismutase [Mn/Fe]
          Length = 209

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 272 QISISFGRFRTLCEEFRSTMKWNCDFGWTIFSNRDRKISIAEAS 141
           QIS  FG F   C +F+         GWT     D K+ I + S
Sbjct: 112 QISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVYHDNKLQIIKTS 155
>sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 920

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -2

Query: 557 RINRPHHE*KKI-----LIHGKGCCVWWDWKGVIHHELLDQNQTVNAELYVQQMHPIDNM 393
           R N+P  E + +     L   KGC VWW++      +LL  +   NA+ Y + MH +D  
Sbjct: 485 RTNKPCFESEVLEHVANLFEEKGCDVWWEYN---IKDLLPPSYQDNAKHYEKVMHILDVW 541

Query: 392 AFSCCTITLVL 360
             S  T   VL
Sbjct: 542 FDSGSTFKAVL 552
>sp|P51178|PLCD1_HUMAN 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta 1
           (Phosphoinositide phospholipase C) (PLC-delta-1)
           (Phospholipase C-delta-1) (PLC-III)
          Length = 756

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 873 EERVNQLLHEDVRQTT*ELAKRMGCSQM------TIVRHFGSMGKAQKLGAWVPHLLSEN 712
           E+R   ++ +D R T   +A     +Q        I+ H GSM + QKL  W+   L + 
Sbjct: 93  EDRCFSIVFKDQRNTLDLIAPSPADAQHWVLGLHKIIHHSGSMDQRQKLQHWIHSCLRKA 152

Query: 711 NKNQRSTIS 685
           +KN+ + +S
Sbjct: 153 DKNKDNKMS 161
>sp|P09157|SODF_ECOLI Superoxide dismutase [Fe]
          Length = 193

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 269 ISISFGRFRTLCEEFRSTMKWNCDFGWT-IFSNRDRKISIAEASKNLLNVGKKLSTTAGN 93
           I+ SFG F     +F      N   GWT +  N D K++I   S    N G  L+T A  
Sbjct: 97  IAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTS----NAGTPLTTDATP 152

Query: 92  ILLTNL 75
           +L  ++
Sbjct: 153 LLTVDV 158
>sp|P15554|NU4LM_STRPU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
           4L)
          Length = 97

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +3

Query: 396 IVDRVHLLNIKLCVHCLIL---IE*FVMNNAFPVPPNTTSFSVDENLFLLVV 542
           +++R+H L+I LC+  L++   I   + NN   VP NTT      NLF+L +
Sbjct: 19  LLNRLHFLSILLCLELLLISLFIGIAIWNNNTGVPQNTTF-----NLFVLTL 65
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,121,873
Number of Sequences: 369166
Number of extensions: 2463301
Number of successful extensions: 6367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6367
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)