Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H02
(891 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 97 8e-20
sp|P59391|ARGC1_LACPL N-acetyl-gamma-glutamyl-phosphate red... 32 2.4
sp|Q12469|SKM1_YEAST Serine/threonine-protein kinase SKM1 (... 32 3.1
sp|Q8K9K6|FLGE_BUCAP Flagellar hook protein flgE 31 4.1
sp|Q33821|NU4LM_ASTPE NADH-ubiquinone oxidoreductase chain ... 31 4.1
sp|Q9ZD15|SODF_RICPR Superoxide dismutase [Mn/Fe] 31 5.3
sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase (Isoleucine--... 31 5.3
sp|P51178|PLCD1_HUMAN 1-phosphatidylinositol-4,5-bisphospha... 30 6.9
sp|P09157|SODF_ECOLI Superoxide dismutase [Fe] 30 6.9
sp|P15554|NU4LM_STRPU NADH-ubiquinone oxidoreductase chain ... 30 9.0
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 96.7 bits (239), Expect = 8e-20
Identities = 43/98 (43%), Positives = 65/98 (66%)
Frame = -1
Query: 384 LLHDNARPHIANVTKTAILTFGWEVLPHPPYSTNLAPSNFHIFRSLSNSLRGVSFNNEVE 205
L+ + +PH+A T + GW VLPHPPYS +LAP+++H+F SLS+ +R F++E
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211
Query: 204 LRFWLDDFFESRPEDFYRRGIEKLIERWEEVVNNSGQY 91
L+ L FF SR DF+ RGI L +W++VV+ +G+Y
Sbjct: 212 LKTELSTFFSSRSPDFFSRGIMMLPSKWQQVVDTNGEY 249
Score = 63.5 bits (153), Expect = 7e-10
Identities = 35/95 (36%), Positives = 51/95 (53%)
Frame = -1
Query: 888 PDEFDEERVNQLLHEDVRQTT*ELAKRMGCSQMTIVRHFGSMGKAQKLGAWVPHLLSENN 709
P E +EE + +L+ E+ R + E+ +++ C TI H G +G KLG WVPH LS +
Sbjct: 69 PVELNEEDLVKLVEEEPRLSLREMEEKLECCHSTIACHLGRLGFTSKLGIWVPHELSASQ 128
Query: 708 KNQRSTISASLLARHRATDGHKKRFLYRIITGDEK 604
K R + LL R D +L ++TGDEK
Sbjct: 129 KLTRVNVCTQLLTFRRKFD-----WLNNLVTGDEK 158
>sp|P59391|ARGC1_LACPL N-acetyl-gamma-glutamyl-phosphate reductase 1 (AGPR 1)
(N-acetyl-glutamate semialdehyde dehydrogenase 1) (NAGSA
dehydrogenase 1)
Length = 343
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = -1
Query: 312 VLPHPPYSTNLAPSNFHIFRSLSNSLRGVS---------FNNEVELRFWLDDFFESRPED 160
+L HP ++ S + + + L+G + FN+ +L F LD F + P
Sbjct: 24 LLNHPNFNVTFISSEKYAGKPVEKMLKGFAHNGHSHNLRFNHLDDLPFDLDFVFSALPTG 83
Query: 159 FYRRGIEKLIERWEEVVNNSGQY 91
+ +EK++E+ + N SG +
Sbjct: 84 VLPKYVEKILEKTSLIFNVSGDF 106
>sp|Q12469|SKM1_YEAST Serine/threonine-protein kinase SKM1 (Protein kinase 75490 D)
Length = 655
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 357 IANVTKTAILTFGWEVLPHPPYSTNLAPSNFHIFRSLSNSLRGVSFNNEVELRFWLDDFF 178
I NV++ + +E+L N++P N + + S S +S E +L WLD F
Sbjct: 55 ITNVSRIQLKQNCFEILRATDQKENISPINSYFYESNSKRSIFISTRTERDLHGWLDAIF 114
Query: 177 ESRP 166
P
Sbjct: 115 AKCP 118
>sp|Q8K9K6|FLGE_BUCAP Flagellar hook protein flgE
Length = 409
Score = 31.2 bits (69), Expect = 4.1
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -1
Query: 318 WEVLPHPPYSTNLAPSNFHIFRSLSNSLRGV--SFNNEVELRFWLDDFF---ESRPEDFY 154
++++ H YS + S I + N GV N +++L D FF +S+ +Y
Sbjct: 40 FDIVSHSFYSNQIIKSGVGISNLVQNFSDGVLVQTNRDLDLGIVQDGFFRVLDSKGYVYY 99
Query: 153 RRGIEKLIERWEEVVNNSGQY 91
R L+++ + +VN G Y
Sbjct: 100 TRNGHFLLDKNKNIVNGQGMY 120
>sp|Q33821|NU4LM_ASTPE NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 98
Score = 31.2 bits (69), Expect = 4.1
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 396 IVDRVHLLNIKLCVHCLILIE*FVMNNAFPVPPNTTSFSVDENLFLLVV 542
+++R+H L+I LC+ L+LI F+ + + NTT F + NL LL +
Sbjct: 20 LINRLHFLSILLCLE-LLLISLFLSLTVWAINANTT-FLLTNNLILLTL 66
>sp|Q9ZD15|SODF_RICPR Superoxide dismutase [Mn/Fe]
Length = 209
Score = 30.8 bits (68), Expect = 5.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 272 QISISFGRFRTLCEEFRSTMKWNCDFGWTIFSNRDRKISIAEAS 141
QIS FG F C +F+ GWT D K+ I + S
Sbjct: 112 QISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVYHDNKLQIIKTS 155
>sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 920
Score = 30.8 bits (68), Expect = 5.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -2
Query: 557 RINRPHHE*KKI-----LIHGKGCCVWWDWKGVIHHELLDQNQTVNAELYVQQMHPIDNM 393
R N+P E + + L KGC VWW++ +LL + NA+ Y + MH +D
Sbjct: 485 RTNKPCFESEVLEHVANLFEEKGCDVWWEYN---IKDLLPPSYQDNAKHYEKVMHILDVW 541
Query: 392 AFSCCTITLVL 360
S T VL
Sbjct: 542 FDSGSTFKAVL 552
>sp|P51178|PLCD1_HUMAN 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta 1
(Phosphoinositide phospholipase C) (PLC-delta-1)
(Phospholipase C-delta-1) (PLC-III)
Length = 756
Score = 30.4 bits (67), Expect = 6.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = -1
Query: 873 EERVNQLLHEDVRQTT*ELAKRMGCSQM------TIVRHFGSMGKAQKLGAWVPHLLSEN 712
E+R ++ +D R T +A +Q I+ H GSM + QKL W+ L +
Sbjct: 93 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVLGLHKIIHHSGSMDQRQKLQHWIHSCLRKA 152
Query: 711 NKNQRSTIS 685
+KN+ + +S
Sbjct: 153 DKNKDNKMS 161
>sp|P09157|SODF_ECOLI Superoxide dismutase [Fe]
Length = 193
Score = 30.4 bits (67), Expect = 6.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -2
Query: 269 ISISFGRFRTLCEEFRSTMKWNCDFGWT-IFSNRDRKISIAEASKNLLNVGKKLSTTAGN 93
I+ SFG F +F N GWT + N D K++I S N G L+T A
Sbjct: 97 IAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTS----NAGTPLTTDATP 152
Query: 92 ILLTNL 75
+L ++
Sbjct: 153 LLTVDV 158
>sp|P15554|NU4LM_STRPU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 97
Score = 30.0 bits (66), Expect = 9.0
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +3
Query: 396 IVDRVHLLNIKLCVHCLIL---IE*FVMNNAFPVPPNTTSFSVDENLFLLVV 542
+++R+H L+I LC+ L++ I + NN VP NTT NLF+L +
Sbjct: 19 LLNRLHFLSILLCLELLLISLFIGIAIWNNNTGVPQNTTF-----NLFVLTL 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,121,873
Number of Sequences: 369166
Number of extensions: 2463301
Number of successful extensions: 6367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6367
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)