Planaria EST Database


DrC_01238

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01238
         (766 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54677|PI4K_DICDI  Phosphatidylinositol 4-kinase (PI4-kin...    35   0.29 
sp|P39937|PAC2_YEAST  Protein PAC2                                 33   0.65 
sp|Q9Y5T5|UBP16_HUMAN  Ubiquitin carboxyl-terminal hydrolase...    33   0.85 
sp|Q12527|ATG11_YEAST  Autophagy-related protein 11 (Cytopla...    33   0.85 
sp|P07248|ADR1_YEAST  Regulatory protein ADR1                      33   0.85 
sp|Q9J5D0|MP44_FOWPV  Probable metalloendopeptidase G1-type        32   1.4  
sp|Q01389|BCK1_YEAST  Serine/threonine-protein kinase BCK1/S...    32   2.5  
sp|Q09312|FBF2_CAEEL  Fem-3 mRNA binding factor 2                  32   2.5  
sp|P41001|TOP2_PLAFK  DNA topoisomerase 2 (DNA topoisomerase...    31   3.2  
sp|P31332|L_SYNV  Large structural protein (L protein) (Tran...    31   4.2  
>sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kinase) (PtdIns-4-kinase)
           (PI4K-alpha)
          Length = 1093

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 25/98 (25%), Positives = 50/98 (51%)
 Frame = +2

Query: 11  IQSTPKLKSLNCSNSELSKSVNDENSTFDSKINTLLKDSKLDNEYNTISITDQNDNLSNF 190
           I++ PK K +N +N+  +   N+ ++  D+  N +L +   DN     SI D+N+   N 
Sbjct: 175 IENDPK-KDINSNNNNNNNINNNNSNNDDNNNNEILPNENSDN-----SINDENNQYGN- 227

Query: 191 IQINTSKPEINYNGKYISLRGSISAQKKSNYSLRNSSS 304
                S    N +G+  +++  I++Q KS+ ++   +S
Sbjct: 228 -----SNNNNNISGENNNIKIDINSQNKSDSNIETLNS 260
>sp|P39937|PAC2_YEAST Protein PAC2
          Length = 518

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 29  LKSLNCSNSELSKSVNDENSTFDSKINTLLKDSKLDNEYNTISITDQ-NDNLSNFIQINT 205
           LK LN SN+++S++ +    + +S   T       DN++   S+ D  N    +   I+ 
Sbjct: 278 LKGLNVSNNQISRAPSIAIYSVESLDIT-------DNKFKERSLIDDLNKTFPSLKNIHL 330

Query: 206 SKPEINYNGKYISL 247
           S  E NYNG YI++
Sbjct: 331 SGNEFNYNGNYINV 344
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 (Ubiquitin thiolesterase
           16) (Ubiquitin-specific processing protease 16)
           (Deubiquitinating enzyme 16) (Ubiquitin processing
           protease UBP-M)
          Length = 823

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 122 DSKLDNEYNTISITDQNDNLSNFIQINTSKPEINYNGKYIS 244
           +S  DN+ +T  +  +N N+ N +++ TS P  N NG Y++
Sbjct: 523 ESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAYLT 563
>sp|Q12527|ATG11_YEAST Autophagy-related protein 11 (Cytoplasm to vacuole targeting protein
            9)
          Length = 1178

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
 Frame = +2

Query: 11   IQSTPKLKSLNCSNSELSKSVNDE----------NSTFDSKINTLL-----KDSKLDNEY 145
            ++ T   ++L   N EL++  N+E          N++F  ++N ++     K  KL  +Y
Sbjct: 743  VEKTAYRETLTNLNQELARLTNEEQSHRTEIFTLNASFKKQLNDIISQDNEKIEKLTGDY 802

Query: 146  NTISITDQN-------DNLSNFIQINTSKPEINYNGKYISLRGSISAQKKSNYSLRNSSS 304
            + +S + +         N  +  ++N  K +I   GK I     ++++K  +Y+  NSSS
Sbjct: 803  DDVSKSRERLQMDLDESNKKHEQEVNLLKADIERLGKQI-----VTSEK--SYAETNSSS 855

Query: 305  MDKMFEF 325
            M+K  +F
Sbjct: 856  MEKGEKF 862
>sp|P07248|ADR1_YEAST Regulatory protein ADR1
          Length = 1323

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +2

Query: 161 TDQNDNLSNFIQINTSK---PEINYNGKYI---SLRGSISAQKKSNYSLRNSSSMDK 313
           T  N N  N    NT +   PE N   KY+   + R S SAQ  S+Y+L + SS+++
Sbjct: 193 TPDNGNFLNRTTANTRRKASPEANVKRKYLKKLTRRASFSAQSASSYALPDQSSLEQ 249
>sp|Q9J5D0|MP44_FOWPV Probable metalloendopeptidase G1-type
          Length = 626

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -3

Query: 686 LVYKMSNIGIICTSAIYSFHFSIYSSLGTNIFRIFFVMLDTICKNCANTANLNRVIQNNT 507
           L+Y +++I +  ++  Y F F+I+     N    FFV L  I   C   +N N  I+ + 
Sbjct: 558 LIYYLTSIKLGISNTFYIFAFTIFPEKVYN----FFVGLKEITNRCLIVSNKNTKIEEDD 613

Query: 506 CDSLRTAIV 480
             SL   IV
Sbjct: 614 YSSLNKQIV 622
>sp|Q01389|BCK1_YEAST Serine/threonine-protein kinase BCK1/SLK1/SSP31
          Length = 1478

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +2

Query: 14  QSTPKLKSLNCSNSELSKSVNDENSTFDSKINTLLKDSKLDNEYNTISITDQNDNL-SNF 190
           +S  KLKS   S+  +   + +  S  D   +    +S L    +  S TD+ + L S  
Sbjct: 226 KSASKLKSSRSSSESIKSKLKNSKSQEDISNSRSTSESALSPTKSGPSKTDEKNFLHSTS 285

Query: 191 IQINTSKPEINYNGKYISLRGSISAQKKSNYSLRN 295
               T      Y   +ISLRGS S+   S  S  N
Sbjct: 286 THQKTKSASSLYRRSFISLRGSSSSNASSAKSPSN 320
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA binding factor 2
          Length = 632

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 147 LYSLSNFESFSNVLILESKVEFSSFTDLD-NSELLQFKDFNLGVDCIN 7
           L SL +F+SF NV +  S+   SSF   D +S  L+  DF+  V C +
Sbjct: 83  LMSLRSFQSFPNVFMPVSRSRTSSFIQSDTDSSRLESDDFSQNVRCFS 130
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 (DNA topoisomerase II)
          Length = 1398

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 17   STPKLKSLNCSNSELSKSVNDENSTFDS--KINTLLKDSKLDNEYNTISITDQNDNLSNF 190
            +TP +  LN  N+E S +  D  ST  +  K    + DS  DN     S    NDN+++ 
Sbjct: 1311 NTPLINRLNDENNEFSSNNVDNKSTNKNSRKKKPKIADSTNDNNSELNSSIQINDNVNDD 1370

Query: 191  IQINTS-KPEINYN 229
            I I  S    IN N
Sbjct: 1371 INITISPNKTINVN 1384
>sp|P31332|L_SYNV Large structural protein (L protein) (Transcriptase) (Replicase)
           [Includes: RNA-directed RNA polymerase ; mRNA
           (guanine-N(7)-)-methyltransferase ; mRNA
           guanylyltransferase ]
          Length = 2116

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +2

Query: 26  KLKSLNCSNSELSKSVNDENSTFDS-KINTLLK--DSKLDNEYNTISITDQN--DNLSNF 190
           K K+++ + SEL +SVN +NS FDS K   +LK  + + D  YN +   D    D     
Sbjct: 502 KDKAISMTRSELIESVNTKNSVFDSTKRRGILKWLNEQSDKIYNFLMRIDDKGLDEDDCI 561

Query: 191 IQINTSKPEINYNGKYISL 247
           I +   + E+    ++ SL
Sbjct: 562 IGLYPKEREMKTKARFFSL 580
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,921,211
Number of Sequences: 369166
Number of extensions: 1649388
Number of successful extensions: 4599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4587
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)