Planaria EST Database


DrC_01230

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01230
         (691 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CDC0|SPB13_MOUSE  Serpin B13                                  32   2.1  
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    32   2.1  
sp|Q89AP2|RS2_BUCBP  30S ribosomal protein S2                      31   2.7  
sp|Q10664|MEK2_CAEEL  Dual specificity mitogen-activated pro...    30   4.6  
sp|Q89A96|MDLB_BUCBP  Multidrug resistance-like ATP-binding ...    30   4.6  
sp|Q9UIV8|SPB13_HUMAN  Serpin B13 (Hurpin) (HaCaT UV-repress...    30   6.0  
sp|P29508|SCCA1_HUMAN  Squamous cell carcinoma antigen 1 (SC...    30   6.0  
sp|Q6URW6|MYH14_MOUSE  Myosin-14 (Myosin heavy chain, nonmus...    30   6.0  
sp|P04540|NU5M_TRYBB  NADH-ubiquinone oxidoreductase chain 5...    30   6.0  
sp|Q94165|HM34_CAEEL  Homeobox protein ceh-34                      30   7.8  
>sp|Q8CDC0|SPB13_MOUSE Serpin B13
          Length = 389

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 77  EMKDLMKHNDEQQAKLNKSKDQETNLRVKELLPQTNRMLLEIVKSQALVLVN 232
           E  D +   DE + K+N   + +TN++VK+L P+ +     +  S  LVL+N
Sbjct: 132 EPVDFVNAADESRKKINSWVESQTNVKVKDLFPEGS-----LNSSTKLVLIN 178
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +2

Query: 56   KRKQLVREMKDLMKHNDEQQAKLNKSKDQETNLRVKELLP--QTNR-MLLEIVKS 211
            K  +L  E+K  MK   E+Q+ L KS+    NL++KEL    +TN   LLE +KS
Sbjct: 1199 KNDELEGEVK-AMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKS 1252
>sp|Q89AP2|RS2_BUCBP 30S ribosomal protein S2
          Length = 228

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 26  WTNKMDNNW*KRKQLVREMKDLMKHNDEQQAKLNKSKDQETNLRVKELLPQTNRM 190
           W   M  NW   +Q ++ +KDL   +  Q    NK   +E  LR++EL    N +
Sbjct: 95  WLGGMLTNWKTVRQSIKRLKDL--ESQSQDGTFNKLTKKEVLLRMRELSKLENSL 147
>sp|Q10664|MEK2_CAEEL Dual specificity mitogen-activated protein kinase kinase mek-2 (MAP
           kinase kinase mek-2)
          Length = 387

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
 Frame = -3

Query: 227 LILTPDSLLFLAAYGLSVAVILSL*DLFLGPLTYLA---LPVVHRYVSS-----GLSFLE 72
           +++  +  + L  +G+S  +I S+ + F+G  +Y+A   L   H  +SS     GLS +E
Sbjct: 201 MLVNSNGEIKLCDFGVSGMLIDSMANSFVGTRSYMAPERLTGSHYTISSDIWSFGLSLVE 260

Query: 71  LTVFVFTSCYPSYSSMSTLFN 9
           L +  +    PS +  +T+FN
Sbjct: 261 LLIGRYPVPAPSQAEYATMFN 281
>sp|Q89A96|MDLB_BUCBP Multidrug resistance-like ATP-binding protein mdlB
          Length = 578

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 595 FLSHYFLTSLVNFTFLLVSYFLI 663
           F+ HYF+ + VN++  +++Y+LI
Sbjct: 49  FIKHYFINNTVNYSLKIITYYLI 71
>sp|Q9UIV8|SPB13_HUMAN Serpin B13 (Hurpin) (HaCaT UV-repressible serpin) (Protease
           inhibitor 13) (Headpin)
          Length = 391

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 77  EMKDLMKHNDEQQAKLNKSKDQETNLRVKELLPQTNRMLLEIVKSQALVLVN 232
           E  D +   DE + K+N   + +TN ++K+L P  +     I  S  LVLVN
Sbjct: 133 EPVDFVNAADESRKKINSWVESKTNEKIKDLFPDGS-----ISSSTKLVLVN 179
>sp|P29508|SCCA1_HUMAN Squamous cell carcinoma antigen 1 (SCCA-1) (Protein T4-A)
          Length = 390

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 77  EMKDLMKHNDEQQAKLNKSKDQETNLRVKELLPQTNRMLLEIVKSQALVLVN 232
           E  D     +E + K+N   + +TN ++K L+P+ N     I  +  LVLVN
Sbjct: 132 ESVDFANAPEESRKKINSWVESQTNEKIKNLIPEGN-----IGSNTTLVLVN 178
>sp|Q6URW6|MYH14_MOUSE Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle myosin heavy
            chain IIc) (NMHC II-C)
          Length = 2000

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
 Frame = +2

Query: 56   KRKQLVREMKDLMKHNDEQ--QAKLNKSKDQETNLRVKELLPQTN-------RMLLEIVK 208
            +R+QL ++++D     DE+  Q  L  +  ++  L ++EL  QT+         + ++ K
Sbjct: 1611 RRRQLAKQLRDAEVERDEERKQRALAMAARKKLELELEELKAQTSAAGQGKEEAVKQLKK 1670

Query: 209  SQALVLVNWRTINKAYSSDDK 271
             Q  +   WR + +  SS D+
Sbjct: 1671 MQVQMKELWREVEETRSSRDE 1691
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 590

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
 Frame = -2

Query: 273 YLSSELYALLMVLQLTNTNA*LFTISSSIRFVCGSNSFTLRFVSWSFD----------LF 124
           Y    L ALLM+L   N    LF     I F    N F L F+ + F           LF
Sbjct: 391 YCKDMLLALLMLLSFYNIIEFLFISIIFIFFTMIYNYFLLFFLMFVFKCFCLVDCLFLLF 450

Query: 123 SFACCSSLCFIRSFISRTNCFRFHQLLSILFVHVDIV 13
            + CC   C I  ++          +LSI F+ +D V
Sbjct: 451 DYECCLVYCLISLYMC---------ILSIFFI-IDFV 477
>sp|Q94165|HM34_CAEEL Homeobox protein ceh-34
          Length = 256

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 170 LPQTNRMLLEIVKSQALVLV---NWRTINKAYSSDDK*TFRINHLVVNLEWKDGNSLSED 340
           LPQ  +++  ++K+QALV     NW+ + K            NH V+   W D +     
Sbjct: 49  LPQCYQVMESVLKAQALVYFTTQNWKMLYKLLECSK--FSPHNHTVLQNLWLDAHYKEAA 106

Query: 341 KYKHRSQPAIVKTGYRI 391
           K K R   A+ K  YRI
Sbjct: 107 KTKDRELGAVCK--YRI 121
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,470,434
Number of Sequences: 369166
Number of extensions: 1478851
Number of successful extensions: 4282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4280
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)