Planaria EST Database


DrC_01228

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01228
         (486 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08470|L2GL_DROPS  Lethal(2) giant larvae protein (P127)        32   1.0  
sp|P43706|RECX_HAEIN  Regulatory protein recX                      32   1.0  
sp|Q92698|RAD54_HUMAN  DNA repair and recombination protein ...    30   3.0  
sp|Q97KW7|PSD2_CLOAB  Phosphatidylserine decarboxylase proen...    29   5.0  
sp|P13395|SPTCA_DROME  Spectrin alpha chain                        29   5.0  
sp|Q59032|YG38_METJA  Hypothetical protein MJ1638                  29   6.6  
sp|P14840|HXB4_CHICK  Homeobox protein Hox-B4 (Chox-Z)             28   8.6  
sp|P25356|BPH1_YEAST  Beige protein homolog 1                      28   8.6  
>sp|Q08470|L2GL_DROPS Lethal(2) giant larvae protein (P127)
          Length = 1166

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +3

Query: 195  DDVCGLDECSCITTNGVVLYDLSSSMLSRVLPSANNHAKILGGKHLSEVILVKKIKNHVA 374
            +D+ G+    C T +G  LY +SSS L R+   A + +K+L    + EV  ++   N  A
Sbjct: 934  EDINGISSL-CFTNDGEALYMMSSSELQRI---ALSTSKVLQPTGIVEVEPLESEDNETA 989

Query: 375  FVFNENTEEE 404
             + N+  E +
Sbjct: 990  SLVNDGNESD 999
>sp|P43706|RECX_HAEIN Regulatory protein recX
          Length = 152

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +3

Query: 3   VRVVSEEEY--FDLNNSCQTKSIKSDEFNDELKDSVEKNW----LFVGLHVNI-IDKNYC 161
           V ++S  EY  F+L N  Q K+   +E +D L     KNW     F   ++N  + K Y 
Sbjct: 10  VNLLSRREYSEFELRNKMQEKNFSEEEIDDALSRCQAKNWQSDRRFSENYLNSRVQKGYG 69

Query: 162 GGKYHNKEVIIDDVCGLDECSCITTNGVVLYDLSSSMLSRVLPSAN 299
            G+   +   +  V        +  + +  Y+++ ++L +  P+ N
Sbjct: 70  VGRIRQELRQLKGVSSDIIDEVLMESEIDWYEMAENLLRKKFPNYN 115
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like (RAD54 homolog)
           (hRAD54) (hHR54)
          Length = 747

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 249 LYDLSSSMLSRVLPSANNHAKILGGK----HLSEVILVKKIKNHVAFVFNENTEEE 404
           L  L + +  R L  A    ++L GK     LS +  +KK+ NH A ++++  EEE
Sbjct: 416 LTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEE 471
>sp|Q97KW7|PSD2_CLOAB Phosphatidylserine decarboxylase proenzyme 2 [Contains:
           Phosphatidylserine decarboxylase alpha chain 2;
           Phosphatidylserine decarboxylase beta chain 2]
          Length = 291

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
 Frame = +3

Query: 75  EFNDELKDSVEKNWLFVG--LHVNIIDKNYCGGKYHNKEVIIDDV---CGLDECSC---- 227
           E +D+LK +++ +   VG  L+   + + Y  G      + +DD    C +D+ S     
Sbjct: 119 EIDDDLKMNIKNSIYTVGELLNDEKLSREYKNGTCLIFRLTVDDYHRYCFIDDGSLKYRK 178

Query: 228 ITTNGVVLYDLSSSMLSRVLPSANNHAKILGGKHLSEVI-------LVKKIKNHVAFVFN 386
           +    +      SS   +V    N    +L  ++  +VI       LV KIKNH   VF 
Sbjct: 179 VINGRLHTVGPISSKRYKVYSENNREYSVLKTRNFGKVIQIEVGALLVGKIKNHSIKVFK 238

Query: 387 ENTEEEY 407
           +  E+ Y
Sbjct: 239 KGDEKGY 245
>sp|P13395|SPTCA_DROME Spectrin alpha chain
          Length = 2415

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 3    VRVVSEEEYFDLNNSCQTKSIKSDEFNDELKDSVEKNWLFVGLHVNIIDKNYCGG 167
            +++ +EE Y D  N  Q+K  K   F  EL  + ++    + +  N+IDK  C G
Sbjct: 1519 LQLATEESYKDPAN-IQSKHQKHQAFEAELAANADRIQSVLAMGGNLIDKKQCSG 1572
>sp|Q59032|YG38_METJA Hypothetical protein MJ1638
          Length = 260

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +3

Query: 21  EEYFDLNN-SCQTKSIKSDEFNDELKDSVEKNWL---FVGLHVNIIDKNYCGGKYHNKEV 188
           ++ FD+   SC +K I +DE  +  K+  +K  +   FV + +  + K    GK+H    
Sbjct: 83  KQIFDVKAVSCYSKYIMTDEMRENAKNIAKKIGISLEFVSIDLEEVYKGVVNGKFH---- 138

Query: 189 IIDDVCGLDECSCITTNGVVLY 254
                CG   C  +  N V+ Y
Sbjct: 139 ----PCG--RCHKVIENAVIDY 154
>sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 (Chox-Z)
          Length = 245

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 45  SCQTKSIKSDEFNDELKDSVEKNWLFVGLHVNIIDKNYCGGK 170
           SC   S+     N   K+ V   W+   +HV+ ++ NY GG+
Sbjct: 109 SCSQNSLNQSPSNSSCKEPVVYPWM-KKVHVSTVNPNYSGGE 149
>sp|P25356|BPH1_YEAST Beige protein homolog 1
          Length = 2167

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
 Frame = +3

Query: 147  DKNYCGGKYHNKEVIIDDVCGLDECSC---------ITTNGVV-LYDLSSSMLSRVLPSA 296
            DK+   G   NK+ +   +C L E  C         +  +G+V ++D+ +  L R +   
Sbjct: 1960 DKHSVSGNLENKKTMFGHLCELKEMRCYHDYNTLLTLDISGLVYVWDMINFELVRQI--T 2017

Query: 297  NNHAKILGGKHLSEVILVKKIKNHVAFVFNEN 392
            N+  K+   +H   ++++   KN+   +FN N
Sbjct: 2018 NDAQKVAISQHAGSIMVL--TKNNAISIFNLN 2047
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,664,473
Number of Sequences: 369166
Number of extensions: 970777
Number of successful extensions: 2438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)