Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B24
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08470|L2GL_DROPS Lethal(2) giant larvae protein (P127) 32 1.0
sp|P43706|RECX_HAEIN Regulatory protein recX 32 1.0
sp|Q92698|RAD54_HUMAN DNA repair and recombination protein ... 30 3.0
sp|Q97KW7|PSD2_CLOAB Phosphatidylserine decarboxylase proen... 29 5.0
sp|P13395|SPTCA_DROME Spectrin alpha chain 29 5.0
sp|Q59032|YG38_METJA Hypothetical protein MJ1638 29 6.6
sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 (Chox-Z) 28 8.6
sp|P25356|BPH1_YEAST Beige protein homolog 1 28 8.6
>sp|Q08470|L2GL_DROPS Lethal(2) giant larvae protein (P127)
Length = 1166
Score = 31.6 bits (70), Expect = 1.0
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +3
Query: 195 DDVCGLDECSCITTNGVVLYDLSSSMLSRVLPSANNHAKILGGKHLSEVILVKKIKNHVA 374
+D+ G+ C T +G LY +SSS L R+ A + +K+L + EV ++ N A
Sbjct: 934 EDINGISSL-CFTNDGEALYMMSSSELQRI---ALSTSKVLQPTGIVEVEPLESEDNETA 989
Query: 375 FVFNENTEEE 404
+ N+ E +
Sbjct: 990 SLVNDGNESD 999
>sp|P43706|RECX_HAEIN Regulatory protein recX
Length = 152
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +3
Query: 3 VRVVSEEEY--FDLNNSCQTKSIKSDEFNDELKDSVEKNW----LFVGLHVNI-IDKNYC 161
V ++S EY F+L N Q K+ +E +D L KNW F ++N + K Y
Sbjct: 10 VNLLSRREYSEFELRNKMQEKNFSEEEIDDALSRCQAKNWQSDRRFSENYLNSRVQKGYG 69
Query: 162 GGKYHNKEVIIDDVCGLDECSCITTNGVVLYDLSSSMLSRVLPSAN 299
G+ + + V + + + Y+++ ++L + P+ N
Sbjct: 70 VGRIRQELRQLKGVSSDIIDEVLMESEIDWYEMAENLLRKKFPNYN 115
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like (RAD54 homolog)
(hRAD54) (hHR54)
Length = 747
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 249 LYDLSSSMLSRVLPSANNHAKILGGK----HLSEVILVKKIKNHVAFVFNENTEEE 404
L L + + R L A ++L GK LS + +KK+ NH A ++++ EEE
Sbjct: 416 LTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEE 471
>sp|Q97KW7|PSD2_CLOAB Phosphatidylserine decarboxylase proenzyme 2 [Contains:
Phosphatidylserine decarboxylase alpha chain 2;
Phosphatidylserine decarboxylase beta chain 2]
Length = 291
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Frame = +3
Query: 75 EFNDELKDSVEKNWLFVG--LHVNIIDKNYCGGKYHNKEVIIDDV---CGLDECSC---- 227
E +D+LK +++ + VG L+ + + Y G + +DD C +D+ S
Sbjct: 119 EIDDDLKMNIKNSIYTVGELLNDEKLSREYKNGTCLIFRLTVDDYHRYCFIDDGSLKYRK 178
Query: 228 ITTNGVVLYDLSSSMLSRVLPSANNHAKILGGKHLSEVI-------LVKKIKNHVAFVFN 386
+ + SS +V N +L ++ +VI LV KIKNH VF
Sbjct: 179 VINGRLHTVGPISSKRYKVYSENNREYSVLKTRNFGKVIQIEVGALLVGKIKNHSIKVFK 238
Query: 387 ENTEEEY 407
+ E+ Y
Sbjct: 239 KGDEKGY 245
>sp|P13395|SPTCA_DROME Spectrin alpha chain
Length = 2415
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 3 VRVVSEEEYFDLNNSCQTKSIKSDEFNDELKDSVEKNWLFVGLHVNIIDKNYCGG 167
+++ +EE Y D N Q+K K F EL + ++ + + N+IDK C G
Sbjct: 1519 LQLATEESYKDPAN-IQSKHQKHQAFEAELAANADRIQSVLAMGGNLIDKKQCSG 1572
>sp|Q59032|YG38_METJA Hypothetical protein MJ1638
Length = 260
Score = 28.9 bits (63), Expect = 6.6
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 21 EEYFDLNN-SCQTKSIKSDEFNDELKDSVEKNWL---FVGLHVNIIDKNYCGGKYHNKEV 188
++ FD+ SC +K I +DE + K+ +K + FV + + + K GK+H
Sbjct: 83 KQIFDVKAVSCYSKYIMTDEMRENAKNIAKKIGISLEFVSIDLEEVYKGVVNGKFH---- 138
Query: 189 IIDDVCGLDECSCITTNGVVLY 254
CG C + N V+ Y
Sbjct: 139 ----PCG--RCHKVIENAVIDY 154
>sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 (Chox-Z)
Length = 245
Score = 28.5 bits (62), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 45 SCQTKSIKSDEFNDELKDSVEKNWLFVGLHVNIIDKNYCGGK 170
SC S+ N K+ V W+ +HV+ ++ NY GG+
Sbjct: 109 SCSQNSLNQSPSNSSCKEPVVYPWM-KKVHVSTVNPNYSGGE 149
>sp|P25356|BPH1_YEAST Beige protein homolog 1
Length = 2167
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +3
Query: 147 DKNYCGGKYHNKEVIIDDVCGLDECSC---------ITTNGVV-LYDLSSSMLSRVLPSA 296
DK+ G NK+ + +C L E C + +G+V ++D+ + L R +
Sbjct: 1960 DKHSVSGNLENKKTMFGHLCELKEMRCYHDYNTLLTLDISGLVYVWDMINFELVRQI--T 2017
Query: 297 NNHAKILGGKHLSEVILVKKIKNHVAFVFNEN 392
N+ K+ +H ++++ KN+ +FN N
Sbjct: 2018 NDAQKVAISQHAGSIMVL--TKNNAISIFNLN 2047
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,664,473
Number of Sequences: 369166
Number of extensions: 970777
Number of successful extensions: 2438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)