Planaria EST Database


DrC_01222

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01222
         (688 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27895|CIN8_YEAST  Kinesin-like protein CIN8                    39   0.017
sp|P57155|ARGE_BUCAI  Acetylornithine deacetylase (Acetylorn...    35   0.19 
sp|P02845|VIT2_CHICK  Vitellogenin II precursor (Major vitel...    34   0.41 
sp|O35166|GOSR2_MOUSE  27 kDa Golgi SNARE protein (Golgi SNA...    34   0.41 
sp|P40002|YEA7_YEAST  Hypothetical 72.5 kDa protein in GCN4-...    33   0.54 
sp|Q9Y2L6|FRM4B_HUMAN  FERM domain containing protein 4B           33   0.54 
sp|P13828|MSP1_PLAYO  Merozoite surface protein 1 precursor ...    33   0.92 
sp|P39113|CAT8_YEAST  Regulatory protein CAT8                      32   1.6  
sp|P38903|2A5D_YEAST  Serine/threonine protein phosphatase 2...    32   1.6  
sp|Q24174|ABRU_DROME  Abrupt protein (Clueless protein)            32   1.6  
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
          Length = 1038

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
 Frame = +1

Query: 304 LERYTEAYKSLNGIDTLGDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTN 483
           +E Y E  K L   ++ G  N   D       + F + ST +   +   S S +N + ++
Sbjct: 219 IELYNEELKDLLDSNSNGSSNTGFDGQFMKKLRIF-DSSTANNTTSNSASSSRSNSRNSS 277

Query: 484 SSSQGDLSNKNELRNSV--------TFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQTNV 639
             S  DL+ K  L            T + QY + +++ + N S++  GS     +S TN 
Sbjct: 278 PRSLNDLTPKAALLRKRLRTKSLPNTIKQQYQQQQAVNSRNNSSSNSGSTTNNASSNTNT 337

Query: 640 NQSK 651
           N  +
Sbjct: 338 NNGQ 341
>sp|P57155|ARGE_BUCAI Acetylornithine deacetylase (Acetylornithinase) (AO)
           (N-acetylornithinase) (NAO)
          Length = 381

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 295 MRALERYTEAYKSLNGIDTLGDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQ 456
           +R +  + E YKSL  I T+   N+ +D  NKN F D L+   + LN + +  Q
Sbjct: 2   IRKIPSFIEVYKSLIQIPTISSNNKLLDQSNKN-FIDLLSNYFSDLNFSVKNYQ 54
>sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogenin) [Contains:
            Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
            (LVII); YGP40]
          Length = 1850

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 23/103 (22%), Positives = 46/103 (44%)
 Frame = +1

Query: 379  SINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTR 558
            S + N  K   ++S+ S   +   S S ++   ++SSS    SN     +S       +R
Sbjct: 1173 SKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSR 1232

Query: 559  SRSLQNPNTSAAAGGSIMRPGTSQTNVNQSKPPVANGHANPAH 687
            SRS    ++S+++  S     +S +  + S    ++ H++  H
Sbjct: 1233 SRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSKSSSHHSHSHH 1275
>sp|O35166|GOSR2_MOUSE 27 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 2)
           (Membrin)
          Length = 212

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
 Frame = +1

Query: 91  GKLEKSQQLGNSMTQNEAKARVN---SQMAKLEATKQSEQLGK---TVISFEKLKLDT-- 246
           G+LE++ +    + +NE +A +    S + +LE     E L +     +  ++LK D   
Sbjct: 20  GRLERADKQSVHLVENEIQASIEQIFSHLERLEILSSKEPLNRRQNAKLRVDQLKYDVQH 79

Query: 247 FQNVLRSFVHVEMLWHMRALERYTEAYKSL--NGIDT---LGDQNQFIDSI-NKNHFKDF 408
            Q  LR+F H   +   +  +R     ++   N  DT   + +  QF  S+ N +H  D 
Sbjct: 80  LQTALRNFQHRRQVREQQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLHNIHHGMDD 139

Query: 409 LNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSV-------TFEDQY 552
           L     S+ + G R+Q +T LK T      D++N   L N+V        F+D+Y
Sbjct: 140 LIGGGHSI-LEGLRAQRLT-LKGTQKKIL-DIANMLGLSNTVMRLIEKRAFQDKY 191
>sp|P40002|YEA7_YEAST Hypothetical 72.5 kDa protein in GCN4-WBP1 intergenic region
          Length = 666

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 406 FLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRSLQNPNT 585
           ++ QS  + N  G  +    N   +N+SS  + SN N   N+    +      ++ N NT
Sbjct: 316 YITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNT 375

Query: 586 SAAAGGS 606
           +A  G +
Sbjct: 376 NAGNGNN 382
>sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B
          Length = 1062

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 406 FLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRS 567
           +    T      GRR     N+ T+NS S  +L+ K+ LRN V  + Q   S S
Sbjct: 778 YYTTQTLDTRTRGRRRSKKQNVSTSNSGSMPNLAQKDSLRNGVYSKSQEPPSSS 831
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor (Merozoite surface antigens)
            (PMMSA) (230 kDa) (PY230)
          Length = 1772

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 22/112 (19%), Positives = 49/112 (43%)
 Frame = +1

Query: 1    PLIDCSNHLKNVKKEIKKDFAARKKEIAAYGKLEKSQQLGNSMTQNEAKARVNSQMAKLE 180
            P++    +L+ ++K +   ++  K  +     + K      ++T  E K R   + ++L+
Sbjct: 800  PVMTKLYYLEKLQKFLVFSYSCHKYVLLQNSTINKDALSKYALTSEEDKIRTLKRCSELD 859

Query: 181  ATKQSEQLGKTVISFEKLKLDTFQNVLRSFVHVEMLWHMRALERYTEAYKSL 336
                 +    T+ S  +  +D  QN+       EM++H+  L+    + KSL
Sbjct: 860  VLLAIQNNMPTMYSLYESIVDGLQNIYTELYEKEMMYHIYKLKDENPSIKSL 911
>sp|P39113|CAT8_YEAST Regulatory protein CAT8
          Length = 1433

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
 Frame = +1

Query: 352  LGDQNQFIDSINKNHFK-DFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRN 528
            LG+ N F+ ++N +    D++  ++  L      +  ++N  TT+++S     +KN +  
Sbjct: 1249 LGNFNNFMTNVNYSGVDYDYIVDASLGLAPLLVDTPDISNTNTTSTTSN---RSKNSIIL 1305

Query: 529  SVTFEDQYTRS----RSLQNPNTSAAAGGSIMRPGTSQTNVNQS 648
              TF D   RS    R + NP  S  + G +    T  T+  +S
Sbjct: 1306 DTTFNDDLDRSRMNAREVLNPTDSILSQGMVSSVSTRNTSNQRS 1349
>sp|P38903|2A5D_YEAST Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit,
           delta isoform (PP2A, B subunit, B' delta isoform) (RTS1
           protein) (SCS1 protein)
          Length = 757

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/109 (22%), Positives = 44/109 (40%)
 Frame = +1

Query: 355 GDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSV 534
           G Q+  + S  K+H     + ST+    A   S S ++ ++++ S  G  S K       
Sbjct: 71  GKQSGSVPSQGKHH-----SSSTSKTKTATTPSSSSSSSRSSSVSRSGSSSTKKTSSRKG 125

Query: 535 TFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQTNVNQSKPPVANGHANP 681
             + + ++  S      S+++  +IM P    T     K      HA+P
Sbjct: 126 QEQSKQSQQPSQSQKQGSSSSSAAIMNPTPVLTVTKDDKSTSGEDHAHP 174
>sp|Q24174|ABRU_DROME Abrupt protein (Clueless protein)
          Length = 904

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +1

Query: 451 SQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQ 630
           S + +N    NSSS   LSN N   N+      + +  S  +PN ++AA  +     +S 
Sbjct: 204 SHNSSNNNNNNSSSNNSLSNNNNNNNNNAESSNHNKISSYLSPNQTSAACNN-----SSN 258

Query: 631 TNVNQSKPPVANGHAN 678
           +N N       N  +N
Sbjct: 259 SNSNNHSSSHNNSSSN 274
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.309    0.122    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,644,751
Number of Sequences: 369166
Number of extensions: 1474141
Number of successful extensions: 3931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)