Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A23
(688 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 39 0.017
sp|P57155|ARGE_BUCAI Acetylornithine deacetylase (Acetylorn... 35 0.19
sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitel... 34 0.41
sp|O35166|GOSR2_MOUSE 27 kDa Golgi SNARE protein (Golgi SNA... 34 0.41
sp|P40002|YEA7_YEAST Hypothetical 72.5 kDa protein in GCN4-... 33 0.54
sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B 33 0.54
sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor ... 33 0.92
sp|P39113|CAT8_YEAST Regulatory protein CAT8 32 1.6
sp|P38903|2A5D_YEAST Serine/threonine protein phosphatase 2... 32 1.6
sp|Q24174|ABRU_DROME Abrupt protein (Clueless protein) 32 1.6
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
Length = 1038
Score = 38.5 bits (88), Expect = 0.017
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Frame = +1
Query: 304 LERYTEAYKSLNGIDTLGDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTN 483
+E Y E K L ++ G N D + F + ST + + S S +N + ++
Sbjct: 219 IELYNEELKDLLDSNSNGSSNTGFDGQFMKKLRIF-DSSTANNTTSNSASSSRSNSRNSS 277
Query: 484 SSSQGDLSNKNELRNSV--------TFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQTNV 639
S DL+ K L T + QY + +++ + N S++ GS +S TN
Sbjct: 278 PRSLNDLTPKAALLRKRLRTKSLPNTIKQQYQQQQAVNSRNNSSSNSGSTTNNASSNTNT 337
Query: 640 NQSK 651
N +
Sbjct: 338 NNGQ 341
>sp|P57155|ARGE_BUCAI Acetylornithine deacetylase (Acetylornithinase) (AO)
(N-acetylornithinase) (NAO)
Length = 381
Score = 35.0 bits (79), Expect = 0.19
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 295 MRALERYTEAYKSLNGIDTLGDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQ 456
+R + + E YKSL I T+ N+ +D NKN F D L+ + LN + + Q
Sbjct: 2 IRKIPSFIEVYKSLIQIPTISSNNKLLDQSNKN-FIDLLSNYFSDLNFSVKNYQ 54
>sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogenin) [Contains:
Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
(LVII); YGP40]
Length = 1850
Score = 33.9 bits (76), Expect = 0.41
Identities = 23/103 (22%), Positives = 46/103 (44%)
Frame = +1
Query: 379 SINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTR 558
S + N K ++S+ S + S S ++ ++SSS SN +S +R
Sbjct: 1173 SKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSR 1232
Query: 559 SRSLQNPNTSAAAGGSIMRPGTSQTNVNQSKPPVANGHANPAH 687
SRS ++S+++ S +S + + S ++ H++ H
Sbjct: 1233 SRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSKSSSHHSHSHH 1275
>sp|O35166|GOSR2_MOUSE 27 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 2)
(Membrin)
Length = 212
Score = 33.9 bits (76), Expect = 0.41
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 21/175 (12%)
Frame = +1
Query: 91 GKLEKSQQLGNSMTQNEAKARVN---SQMAKLEATKQSEQLGK---TVISFEKLKLDT-- 246
G+LE++ + + +NE +A + S + +LE E L + + ++LK D
Sbjct: 20 GRLERADKQSVHLVENEIQASIEQIFSHLERLEILSSKEPLNRRQNAKLRVDQLKYDVQH 79
Query: 247 FQNVLRSFVHVEMLWHMRALERYTEAYKSL--NGIDT---LGDQNQFIDSI-NKNHFKDF 408
Q LR+F H + + +R ++ N DT + + QF S+ N +H D
Sbjct: 80 LQTALRNFQHRRQVREQQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLHNIHHGMDD 139
Query: 409 LNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSV-------TFEDQY 552
L S+ + G R+Q +T LK T D++N L N+V F+D+Y
Sbjct: 140 LIGGGHSI-LEGLRAQRLT-LKGTQKKIL-DIANMLGLSNTVMRLIEKRAFQDKY 191
>sp|P40002|YEA7_YEAST Hypothetical 72.5 kDa protein in GCN4-WBP1 intergenic region
Length = 666
Score = 33.5 bits (75), Expect = 0.54
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 406 FLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRSLQNPNT 585
++ QS + N G + N +N+SS + SN N N+ + ++ N NT
Sbjct: 316 YITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNT 375
Query: 586 SAAAGGS 606
+A G +
Sbjct: 376 NAGNGNN 382
>sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B
Length = 1062
Score = 33.5 bits (75), Expect = 0.54
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 406 FLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRS 567
+ T GRR N+ T+NS S +L+ K+ LRN V + Q S S
Sbjct: 778 YYTTQTLDTRTRGRRRSKKQNVSTSNSGSMPNLAQKDSLRNGVYSKSQEPPSSS 831
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (230 kDa) (PY230)
Length = 1772
Score = 32.7 bits (73), Expect = 0.92
Identities = 22/112 (19%), Positives = 49/112 (43%)
Frame = +1
Query: 1 PLIDCSNHLKNVKKEIKKDFAARKKEIAAYGKLEKSQQLGNSMTQNEAKARVNSQMAKLE 180
P++ +L+ ++K + ++ K + + K ++T E K R + ++L+
Sbjct: 800 PVMTKLYYLEKLQKFLVFSYSCHKYVLLQNSTINKDALSKYALTSEEDKIRTLKRCSELD 859
Query: 181 ATKQSEQLGKTVISFEKLKLDTFQNVLRSFVHVEMLWHMRALERYTEAYKSL 336
+ T+ S + +D QN+ EM++H+ L+ + KSL
Sbjct: 860 VLLAIQNNMPTMYSLYESIVDGLQNIYTELYEKEMMYHIYKLKDENPSIKSL 911
>sp|P39113|CAT8_YEAST Regulatory protein CAT8
Length = 1433
Score = 32.0 bits (71), Expect = 1.6
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +1
Query: 352 LGDQNQFIDSINKNHFK-DFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRN 528
LG+ N F+ ++N + D++ ++ L + ++N TT+++S +KN +
Sbjct: 1249 LGNFNNFMTNVNYSGVDYDYIVDASLGLAPLLVDTPDISNTNTTSTTSN---RSKNSIIL 1305
Query: 529 SVTFEDQYTRS----RSLQNPNTSAAAGGSIMRPGTSQTNVNQS 648
TF D RS R + NP S + G + T T+ +S
Sbjct: 1306 DTTFNDDLDRSRMNAREVLNPTDSILSQGMVSSVSTRNTSNQRS 1349
>sp|P38903|2A5D_YEAST Serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit,
delta isoform (PP2A, B subunit, B' delta isoform) (RTS1
protein) (SCS1 protein)
Length = 757
Score = 32.0 bits (71), Expect = 1.6
Identities = 24/109 (22%), Positives = 44/109 (40%)
Frame = +1
Query: 355 GDQNQFIDSINKNHFKDFLNQSTTSLNMAGRRSQSMTNLKTTNSSSQGDLSNKNELRNSV 534
G Q+ + S K+H + ST+ A S S ++ ++++ S G S K
Sbjct: 71 GKQSGSVPSQGKHH-----SSSTSKTKTATTPSSSSSSSRSSSVSRSGSSSTKKTSSRKG 125
Query: 535 TFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQTNVNQSKPPVANGHANP 681
+ + ++ S S+++ +IM P T K HA+P
Sbjct: 126 QEQSKQSQQPSQSQKQGSSSSSAAIMNPTPVLTVTKDDKSTSGEDHAHP 174
>sp|Q24174|ABRU_DROME Abrupt protein (Clueless protein)
Length = 904
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +1
Query: 451 SQSMTNLKTTNSSSQGDLSNKNELRNSVTFEDQYTRSRSLQNPNTSAAAGGSIMRPGTSQ 630
S + +N NSSS LSN N N+ + + S +PN ++AA + +S
Sbjct: 204 SHNSSNNNNNNSSSNNSLSNNNNNNNNNAESSNHNKISSYLSPNQTSAACNN-----SSN 258
Query: 631 TNVNQSKPPVANGHAN 678
+N N N +N
Sbjct: 259 SNSNNHSSSHNNSSSN 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.122 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,644,751
Number of Sequences: 369166
Number of extensions: 1474141
Number of successful extensions: 3931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)