Planaria EST Database


DrC_01218

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01218
         (733 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97691|FOXM1_RAT  Forkhead box protein M1 (Winged helix f...    32   2.3  
sp|P02879|RICI_RICCO  Ricin precursor [Contains: Ricin A cha...    31   3.9  
sp|O42917|ESO1_SCHPO  N-acetyltransferase eso1 (Sister chrom...    31   3.9  
sp|Q39128|KAT1_ARATH  Potassium channel KAT1                       30   5.1  
sp|Q9SL78|ATL2D_ARATH  Putative RING-H2 finger protein ATL2D...    30   5.1  
sp|Q08050|FOXM1_HUMAN  Forkhead box protein M1 (Forkhead-rel...    30   6.6  
sp|P06750|AGGL_RICCO  Agglutinin precursor (RCA) [Contains: ...    30   8.6  
>sp|P97691|FOXM1_RAT Forkhead box protein M1 (Winged helix factor from INS-1 cells)
           (INS-1 winged helix)
          Length = 759

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 440 KQQVQREEICHSEPPEVKREAVSRQTMKYSSSAFDLPAES 559
           KQ+++ +E CH E   VK EA SR ++ +  S  + P  S
Sbjct: 200 KQELEEKENCHLEQNRVKVEAPSRASVSWQDSVSERPPYS 239
>sp|P02879|RICI_RICCO Ricin precursor [Contains: Ricin A chain (rRNA N-glycosidase);
           Linker peptide; Ricin B chain]
          Length = 576

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -3

Query: 143 AYMTPVLLENDN----STYDVSILIPEIAPQIHPC 51
           A+ +P+ L+  N    S YDVSILIP IA  ++ C
Sbjct: 260 AFASPIQLQRRNGSKFSVYDVSILIPIIALMVYRC 294
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 (Sister chromatid cohesion protein eso1)
           (ECO1 homolog)
          Length = 872

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +2

Query: 185 LVESSITTFLK-YLTAPEEKRDSLNDDSGSRYHQPVDYHRSKNNGNSK 325
           L+++++  F+  Y+ +P E   S   +SG ++   + +HRS+NNG+SK
Sbjct: 818 LLDNALKKFIYGYVISPAEVAFSQPSESGKQFI--ISWHRSRNNGSSK 863
>sp|Q39128|KAT1_ARATH Potassium channel KAT1
          Length = 677

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 550 WKVECAAGIFHGLSRYSLPFNFWWLRMTNFFSLNLLLRDTSGC 422
           W++   + +F  L +  + FN++W+R T   S+ L     +GC
Sbjct: 173 WRLRRVSSLFARLEK-DIRFNYFWIRCTKLISVTLFAIHCAGC 214
>sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D precursor (RING-H2 finger
           protein ATL12)
          Length = 390

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 600 LHLYIRREELKRKRNPKNRNIEIILMKMILSERRNTRNINIKKL 731
           L +YI REE     + +  +   IL K +L ER    NI+ KKL
Sbjct: 200 LEIYIEREEGTNDGSSRFSSFRKILKKSLLLEREGNENIDEKKL 243
>sp|Q08050|FOXM1_HUMAN Forkhead box protein M1 (Forkhead-related protein FKHL16)
           (Hepatocyte nuclear factor 3 forkhead homolog 11)
           (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix
           factor from INS-1 cells) (M-phase phosphoprotein 2)
           (MPM-2 reactive phosphoprotein 2) (Transcription factor
           Trident)
          Length = 763

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 440 KQQVQREEICHSEPPEVKREAVSRQTMKYSSSAFDLPAES 559
           KQ+++ +E CH E  +VK E  SR +  + +S  + P  S
Sbjct: 201 KQEMEEKENCHLEQRQVKVEEPSRPSASWQNSVSERPPYS 240
>sp|P06750|AGGL_RICCO Agglutinin precursor (RCA) [Contains: Agglutinin A chain (rRNA
           N-glycosidase); Agglutinin B chain]
          Length = 564

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -3

Query: 143 AYMTPVLLENDNST----YDVSILIPEIAPQIHPC 51
           A+ +P+ L+  N +    YDVSILIP IA  ++ C
Sbjct: 248 AFASPIQLQRRNGSKFNVYDVSILIPIIALMVYRC 282
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,820,625
Number of Sequences: 369166
Number of extensions: 1232950
Number of successful extensions: 3425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3425
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)