Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A06
(733 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97691|FOXM1_RAT Forkhead box protein M1 (Winged helix f... 32 2.3
sp|P02879|RICI_RICCO Ricin precursor [Contains: Ricin A cha... 31 3.9
sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 (Sister chrom... 31 3.9
sp|Q39128|KAT1_ARATH Potassium channel KAT1 30 5.1
sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D... 30 5.1
sp|Q08050|FOXM1_HUMAN Forkhead box protein M1 (Forkhead-rel... 30 6.6
sp|P06750|AGGL_RICCO Agglutinin precursor (RCA) [Contains: ... 30 8.6
>sp|P97691|FOXM1_RAT Forkhead box protein M1 (Winged helix factor from INS-1 cells)
(INS-1 winged helix)
Length = 759
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 440 KQQVQREEICHSEPPEVKREAVSRQTMKYSSSAFDLPAES 559
KQ+++ +E CH E VK EA SR ++ + S + P S
Sbjct: 200 KQELEEKENCHLEQNRVKVEAPSRASVSWQDSVSERPPYS 239
>sp|P02879|RICI_RICCO Ricin precursor [Contains: Ricin A chain (rRNA N-glycosidase);
Linker peptide; Ricin B chain]
Length = 576
Score = 30.8 bits (68), Expect = 3.9
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = -3
Query: 143 AYMTPVLLENDN----STYDVSILIPEIAPQIHPC 51
A+ +P+ L+ N S YDVSILIP IA ++ C
Sbjct: 260 AFASPIQLQRRNGSKFSVYDVSILIPIIALMVYRC 294
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 (Sister chromatid cohesion protein eso1)
(ECO1 homolog)
Length = 872
Score = 30.8 bits (68), Expect = 3.9
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 185 LVESSITTFLK-YLTAPEEKRDSLNDDSGSRYHQPVDYHRSKNNGNSK 325
L+++++ F+ Y+ +P E S +SG ++ + +HRS+NNG+SK
Sbjct: 818 LLDNALKKFIYGYVISPAEVAFSQPSESGKQFI--ISWHRSRNNGSSK 863
>sp|Q39128|KAT1_ARATH Potassium channel KAT1
Length = 677
Score = 30.4 bits (67), Expect = 5.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 550 WKVECAAGIFHGLSRYSLPFNFWWLRMTNFFSLNLLLRDTSGC 422
W++ + +F L + + FN++W+R T S+ L +GC
Sbjct: 173 WRLRRVSSLFARLEK-DIRFNYFWIRCTKLISVTLFAIHCAGC 214
>sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D precursor (RING-H2 finger
protein ATL12)
Length = 390
Score = 30.4 bits (67), Expect = 5.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 600 LHLYIRREELKRKRNPKNRNIEIILMKMILSERRNTRNINIKKL 731
L +YI REE + + + IL K +L ER NI+ KKL
Sbjct: 200 LEIYIEREEGTNDGSSRFSSFRKILKKSLLLEREGNENIDEKKL 243
>sp|Q08050|FOXM1_HUMAN Forkhead box protein M1 (Forkhead-related protein FKHL16)
(Hepatocyte nuclear factor 3 forkhead homolog 11)
(HNF-3/fork-head homolog 11) (HFH-11) (Winged helix
factor from INS-1 cells) (M-phase phosphoprotein 2)
(MPM-2 reactive phosphoprotein 2) (Transcription factor
Trident)
Length = 763
Score = 30.0 bits (66), Expect = 6.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 440 KQQVQREEICHSEPPEVKREAVSRQTMKYSSSAFDLPAES 559
KQ+++ +E CH E +VK E SR + + +S + P S
Sbjct: 201 KQEMEEKENCHLEQRQVKVEEPSRPSASWQNSVSERPPYS 240
>sp|P06750|AGGL_RICCO Agglutinin precursor (RCA) [Contains: Agglutinin A chain (rRNA
N-glycosidase); Agglutinin B chain]
Length = 564
Score = 29.6 bits (65), Expect = 8.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = -3
Query: 143 AYMTPVLLENDNST----YDVSILIPEIAPQIHPC 51
A+ +P+ L+ N + YDVSILIP IA ++ C
Sbjct: 248 AFASPIQLQRRNGSKFNVYDVSILIPIIALMVYRC 282
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,820,625
Number of Sequences: 369166
Number of extensions: 1232950
Number of successful extensions: 3425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3425
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)