Planaria EST Database


DrC_01211

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01211
         (742 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94312|YH57_SCHPO  PWWP domain protein C215.07c                 33   1.0  
sp|P25588|MRC1_YEAST  Mediator of replication checkpoint pro...    32   2.3  
sp|P38742|YHC3_YEAST  Hypothetical 130.0 kDa protein in SNF6...    31   4.0  
sp|P45978|SCD6_YEAST  Protein SCD6                                 31   4.0  
sp|O94466|RGA7_SCHPO  Probable Rho-GTPase-activating protein 7     31   4.0  
sp|Q62315|JARD2_MOUSE  Jumonji protein (Jumonji/ARID domain-...    30   8.8  
sp|P16237|HMDH_SCHMA  3-hydroxy-3-methylglutaryl-coenzyme A ...    30   8.8  
sp|Q9UU99|YJX4_SCHPO  Protein C23B6.04c in chromosome III          30   8.8  
sp|P78022|RPOD_MYCPN  RNA polymerase sigma factor rpoD (Sigm...    30   8.8  
sp|Q8NEZ4|MLL3_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    30   8.8  
>sp|O94312|YH57_SCHPO PWWP domain protein C215.07c
          Length = 568

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
 Frame = +3

Query: 195 FGVGRSSLRKGSDS--PINSEVLTR--NSPSPT--------KTVKFNPTLHCKTIPNSSN 338
           F   +  L  GSDS  P+ SE +++    P P         K  +  P L   ++P+S +
Sbjct: 169 FFPNKEYLWTGSDSLTPLTSEAISQFLEKPKPKTASLIKAYKMAQSTPDLDSLSVPSSES 228

Query: 339 RNKDIKTKSRKPKPSPNKDDFNDS 410
              + ++     +PSP ++D+ND+
Sbjct: 229 EVSEEESDQEMSEPSPIEEDYNDT 252
>sp|P25588|MRC1_YEAST Mediator of replication checkpoint protein 1 (DNA replication
           checkpoint mediator MRC1)
          Length = 1096

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 243 NSEVLTRNSPSPTKTVKFNPTLHCKTIPNSSNRNKDIKTKSRKPKPSPNKDDFNDS 410
           N E      P PTK      +       +SSN + DIK ++  PKP  N D+ +++
Sbjct: 310 NVEYKKPQKPIPTKKFFSKESFLADFDDSSSNEDDDIKLENAHPKPVQNDDELHEN 365
>sp|P38742|YHC3_YEAST Hypothetical 130.0 kDa protein in SNF6-SPO11 intergenic region
          Length = 1146

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +3

Query: 249 EVLTRNSPSPTKTVKFNPTLHCKTIPNSSNRNKDIKTKSRKPKPSPNKDD--FNDSLFMT 422
           +++    PS T  +  NPT H     N +N NK+  T         NK++  FN     T
Sbjct: 24  QIVYHYPPSNTAFLTNNPTKHQHLYGNHANLNKNTST---------NKEEKLFNSGSTKT 74

Query: 423 SSNIGLVEAHESFISECT 476
           +S I L E+ +S+ +  T
Sbjct: 75  ASQIALNESAKSYNTAIT 92
>sp|P45978|SCD6_YEAST Protein SCD6
          Length = 349

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 7/163 (4%)
 Frame = +3

Query: 162 PSDCEAPPQAQFG--VGRSSLRKGSDSPINSEVLTRNSPSPTKTVKFNPTLHCKTIPNSS 335
           P   ++PPQAQ    V  +      +S + + V      +PT T     +++ K+ P  +
Sbjct: 100 PQQAQSPPQAQAQAHVQTNPQVPKPESNVPAAVAGYGVYTPTSTETATASMNDKSTPQDT 159

Query: 336 NRNKDIKTKSR----KPKPSPNKDDFNDSLFMTSSNIGLVEAHESFISECTHLIRFQMSL 503
           N N   + + +    +PK   NK+  ++    ++ N  +   +E F  +  +    +   
Sbjct: 160 NVNSQSRERGKNGENEPKYQRNKNRSSNRPPQSNRNFKVDIPNEDFDFQSNNAKFTKGDS 219

Query: 504 MENFREKKISSRSYQRD-LIEIIEKQKRSLLDFHLTVTNCPTN 629
            +  +EK++ S  +++D   E    +K S  D   T T   TN
Sbjct: 220 TDVEKEKELESAVHKQDESDEQFYNKKSSFFDTISTSTETNTN 262
>sp|O94466|RGA7_SCHPO Probable Rho-GTPase-activating protein 7
          Length = 695

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
 Frame = +3

Query: 183 PQAQFGVGRSSLRKGSDSPINSEV-LTRNSPSPTKTVKF------NPTLHCKTIPNSSNR 341
           P + +G G S+ +  ++ P+N  + +T   PSP +          NP++     PNSS  
Sbjct: 336 PPSSYGTGSSAGK--TNPPVNPTIKVTAAIPSPLQNTNPAPSTFPNPSVASPAFPNSSTS 393

Query: 342 NKDIKTKSRKP-----KPSPNKDDFNDSLFMTSSN 431
           N      S  P     KPS   +D N S   +SSN
Sbjct: 394 NPSTAPASASPLASTLKPS-TANDTNGSSSSSSSN 427
>sp|Q62315|JARD2_MOUSE Jumonji protein (Jumonji/ARID domain-containing protein 2)
          Length = 1234

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +3

Query: 198 GVGR-SSLRKGSDSPINSEVLTRNSPSPTKTVKFNPTLHCKTIPNSSNRNKDIK-TKSRK 371
           GV R SSL  G++S   ++ +    PSP+KTVK+  T+   T+  +  + + +K TK   
Sbjct: 308 GVTRMSSLGAGTNS---AKKIREVRPSPSKTVKYTATVTKGTVTYTKAKRELVKETKPNH 364

Query: 372 PKPS 383
            KPS
Sbjct: 365 HKPS 368
>sp|P16237|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
          Length = 948

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 231 DSPINSEVLTRNSPSPTKTVKFNPTLHCKTIPNSSNRNKDIKTKSRKPKPSPNKDD 398
           + PINS++   N P   +T+  +       +P  S +  DI  +SRK     +KDD
Sbjct: 369 NKPINSQLRNLNIPKIKETLISDQVKQSPVLPKFSKKLNDIPLQSRKRIYCLHKDD 424
>sp|Q9UU99|YJX4_SCHPO Protein C23B6.04c in chromosome III
          Length = 1008

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 255  LTRNSPSPTKTVKFNPTLHCKTIPNSSNRNKDIKTKSRKPKP 380
            LT  S SPT T   N     KT+ NS++     K +   PKP
Sbjct: 884  LTNRSSSPTVTPTVNTDRQPKTLTNSADELSPQKRRVENPKP 925
>sp|P78022|RPOD_MYCPN RNA polymerase sigma factor rpoD (Sigma-A)
          Length = 499

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/87 (22%), Positives = 41/87 (47%)
 Frame = +3

Query: 315 KTIPNSSNRNKDIKTKSRKPKPSPNKDDFNDSLFMTSSNIGLVEAHESFISECTHLIRFQ 494
           KT+  +   +   K + RKPK +P K+  N  LF      G +++H     +   +I   
Sbjct: 65  KTLQENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILE--GSLKSHTE-NDDTNKVISLL 121

Query: 495 MSLMENFREKKISSRSYQRDLIEIIEK 575
           + + E   +KK ++    +D++ ++ K
Sbjct: 122 VEVWEKKNKKKDNNSLSNKDIVNVLSK 148
>sp|Q8NEZ4|MLL3_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (Homologous to ALR protein)
          Length = 4911

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
 Frame = +3

Query: 186  QAQFGVGRSSLRKGSDSPINSEVLTRNSPSP-----TKTVKFNPTLHCKTIPNS----SN 338
            Q QFG     ++ GSD+P +S + +  +P P     +    F+  L  K  P++    S+
Sbjct: 1785 QQQFGSQHLLVQSGSDTP-SSGIQSPLTPQPGNGNMSPAQSFHKELFTKQPPSTPTSTSS 1843

Query: 339  RNKDIKTKSRKPKPSPNKDDFNDSL 413
             +  +K ++  P P+P++    DSL
Sbjct: 1844 DDVFVKPQAPPPPPAPSRIPIQDSL 1868
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,472,688
Number of Sequences: 369166
Number of extensions: 1468956
Number of successful extensions: 3982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)