Planaria EST Database


DrC_01203

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01203
         (858 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AYM9|CLN8_RAT  Protein CLN8                                   52   2e-06
sp|Q9QUK3|CLN8_MOUSE  Protein CLN8                                 48   4e-05
sp|Q9UBY8|CLN8_HUMAN  Protein CLN8                                 45   2e-04
sp|Q5JZQ7|CLN8_CANFA  Protein CLN8                                 39   0.014
sp|P47153|YJ86_YEAST  Hypothetical 32.0 kDa protein in NNF1-...    36   0.12 
sp|Q8W4Y5|ASCL_LYCES  ASC1-like protein (Alternaria stem can...    33   1.3  
sp|Q9R0B6|LAMC3_MOUSE  Laminin gamma-3 chain precursor (Lami...    31   3.9  
sp|Q96G23|LASS2_HUMAN  LAG1 longevity assurance homolog 2 (T...    31   5.0  
sp|O59735|YHXF_SCHPO  Hypothetical protein C3E17.15c in chro...    31   5.0  
sp|Q99PE7|ABCG5_RAT  ATP-binding cassette sub-family G membe...    30   8.6  
>sp|Q6AYM9|CLN8_RAT Protein CLN8
          Length = 288

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 13/241 (5%)
 Frame = +3

Query: 30  YKWILGSFFCCMTVHHLISPKLFGTFCESYKKLKKPKQMEWDSRIVSTIHALIVSLMSLY 209
           + + LG F  C    H +S  L  T    Y+ L   +++ W+      +  +  +   L+
Sbjct: 32  FVFYLGVFVVC----HQLSSSLNAT----YRSLLAKEKVFWNLAATRAVFGIQSTAAGLW 83

Query: 210 ALIFETQIWSNRISYASRIGSRALSITVGYFLCDMISMPM---YWRGRSLIIFLIHHAFS 380
           AL+ +  ++SN+           ++   G+F  +  ++ +   ++R   L + ++HH F+
Sbjct: 84  ALLGDPVLYSNKALGQQNWCWFHITTATGFFFFENAAVHLSNLFFRTFDLFL-VVHHLFA 142

Query: 381 AGAFL-YAINIQSCIFFCIIRLTSELSTPFTNQRWIFLTSGLSHGHKKVVYSTLVFAVLF 557
              FL  A+N+++  +  +  L  E+STPFT   W+ L +G SH              LF
Sbjct: 143 FLGFLGSAVNLRAGHYLAMTTLLLEMSTPFTCVSWMLLKAGWSHS-------------LF 189

Query: 558 SIVRNWIIVPYW----IMVYFDYGT-----EAHLQSKSINHFLDYVWLGCAGVLDILNIY 710
             V  W+++  +    I+ Y  +       +A   S  + H   +++ G A +  I+N Y
Sbjct: 190 WKVNQWLMIHMFHCRMILTYHMWWVCFQHWDALASSLYLPHLALFLF-GLALLTVIINPY 248

Query: 711 W 713
           W
Sbjct: 249 W 249
>sp|Q9QUK3|CLN8_MOUSE Protein CLN8
          Length = 288

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 50/254 (19%), Positives = 113/254 (44%), Gaps = 9/254 (3%)
 Frame = +3

Query: 30  YKWILGSFFCCMTVHHLISPKLFGTFCESYKKLKKPKQMEWDSRIVSTIHALIVSLMSLY 209
           + + LG F  C    H +S  L  T    Y+ L   +++ W+      +  +  +   L+
Sbjct: 32  FVFYLGVFVVC----HQLSSSLNAT----YRSLAAKEKVFWNLAATRAVFGVQSTTAGLW 83

Query: 210 ALIFETQIWSNRISYASRIGSRALSITVGYFLCDMISMPM---YWRGRSLIIFLIHHAFS 380
           AL+ +  +++++           ++   G+F  + +++ +   ++R   L + ++HH F+
Sbjct: 84  ALLGDPVLYADKALGQQNWCWFHITTATGFFFFENVAVHLSNLFFRTFDLFL-VVHHLFA 142

Query: 381 AGAFL-YAINIQSCIFFCIIRLTSELSTPFTNQRWIFLTSGLS-----HGHKKVVYSTLV 542
              FL  AIN+++  +  +  L  E+STPFT   W+ L +G S       ++ ++     
Sbjct: 143 FLGFLGSAINLRAGHYLAMTTLLLEMSTPFTCISWMLLKAGWSDSLFWKANQWLMIHMFH 202

Query: 543 FAVLFSIVRNWIIVPYWIMVYFDYGTEAHLQSKSINHFLDYVWLGCAGVLDILNIYWGPG 722
             ++ +    W+   +W         +A   S  + H+  +++ G A +  ++N YW   
Sbjct: 203 CRMILTYHMWWVCFCHW---------DALTSSLHLPHWALFLF-GLALLTAVINPYW--- 249

Query: 723 VYRSGRRAFQAVHP 764
              + ++  Q +HP
Sbjct: 250 ---THKKTQQLLHP 260
>sp|Q9UBY8|CLN8_HUMAN Protein CLN8
          Length = 286

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 53/243 (21%), Positives = 100/243 (41%), Gaps = 15/243 (6%)
 Frame = +3

Query: 30  YKWILGSFFCCMTVHHLISPKLFGTFCESYKKLKKPKQMEWDSRIVSTIHALIVSLMSLY 209
           + + LG F  C    H +S  L  T    Y+ L   +++ WD      +  +  +   L+
Sbjct: 32  FVFYLGVFVVC----HQLSSSLNAT----YRSLVAREKVFWDLAATRAVFGVQSTAAGLW 83

Query: 210 ALIFETQIWSNRISYASRIGSRALSITVGYFLCDMISMPMY-WRGRSLIIFL-IHHAFSA 383
           AL+ +  + +++           ++   G+F  + +++ +     R+  +FL IHH F+ 
Sbjct: 84  ALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAF 143

Query: 384 GAFLYA-INIQSCIFFCIIRLTSELSTPFTNQRWIFLTSGLSHGHKKVVYSTLVFAVLFS 560
             FL   +N+Q   +  +  L  E+STPFT   W+ L +G S               LF 
Sbjct: 144 LGFLGCLVNLQVGHYLAMTTLLLEMSTPFTCVSWMLLKAGWSES-------------LFW 190

Query: 561 IVRNWIIV------------PYWIMVYFDYGTEAHLQSKSINHFLDYVWLGCAGVLDILN 704
            +  W+++             +W+  +   G  + L    +  FL    +G A +  I+N
Sbjct: 191 KLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFL----VGLALLTLIIN 246

Query: 705 IYW 713
            YW
Sbjct: 247 PYW 249
>sp|Q5JZQ7|CLN8_CANFA Protein CLN8
          Length = 288

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
 Frame = +3

Query: 30  YKWILGSFFCCMTVHHLISPKLFGTFCESYKKLKKPKQMEWDSRIVSTIHALIVSLMSLY 209
           + + LG F  C    H +S  L  T    Y+ L   +++ W+      +  +  +   L+
Sbjct: 32  FVFYLGVFVVC----HQLSSSLNAT----YRSLVAREKVFWNLAATRAVFGVQSTAAGLW 83

Query: 210 ALIFETQIWSNRISYASRIGSRALSITVGYFLCDMISMPMY-WRGRSLIIFL-IHHAFSA 383
           AL+ +  + +++           ++   G+F  + +++ +     R+  +FL IHH F+ 
Sbjct: 84  ALLVDPVLHADKARGQQNWCWFHIATATGFFFFENVAVHLSNVLFRTFDLFLAIHHLFAF 143

Query: 384 GAFLYAI-NIQSCIFFCIIRLTSELSTPFTNQRWIFLTSGLS 506
             FL ++ N+ +  +  +  L  E STPFT   W+ L +G S
Sbjct: 144 LGFLGSVVNLGAGHYLAMSTLLLEASTPFTCISWMLLKAGWS 185
>sp|P47153|YJ86_YEAST Hypothetical 32.0 kDa protein in NNF1-STE24 intergenic region
          Length = 279

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
 Frame = +3

Query: 39  ILGSFFCCMTVHHLISPKLFGT-FCESYKKLKKPK-QMEWDSRIVSTIHALIVSLMSLYA 212
           I+ SF        +++P L    F + Y  ++ P  +++++   VS I A++ + + L  
Sbjct: 36  IIFSFVFYQLAFSVVAPFLNKVVFRKHYTTIRDPLLKIDFNVHTVSMIQAVVSNTVLLPT 95

Query: 213 LIFETQIWSNRISYASRIGSRALSITVGYFLCDMISMPMYWRGRSLIIFLIHHAFSAGAF 392
           L   T +  N ++Y     S   S++ GYF+ D+     Y++   L  F  H   S    
Sbjct: 96  LT--TPMHYNVVTYTDSYSSMVSSLSAGYFIWDLTMCVRYFKLYGLE-FTGHAIGSVYVM 152

Query: 393 LYAINIQSCIFFCIIRLTSELSTPFTNQRWIFLTSGLSHGHK-----KVVYSTLVFAVLF 557
           L ++    C  +    L  E STPF N  W  +       +       VV   L+  V F
Sbjct: 153 LLSLR-PFCQPWIGRFLIYEASTPFVNINWFIMQCNAKSKNSIPLWFNVVNGLLLMTVFF 211

Query: 558 SIVRNW 575
            +   W
Sbjct: 212 VVRICW 217
>sp|Q8W4Y5|ASCL_LYCES ASC1-like protein (Alternaria stem canker resistance-like protein)
          Length = 303

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
 Frame = +3

Query: 228 QIWSNRISYASRIGSRALSITVGYFLCDMISMPMYWRGR--SLIIFLIHHAFSAGAFLYA 401
           Q+W +++ Y S++  +AL +  G F    I   ++W  R     + + HH  +A   + +
Sbjct: 114 QVWPDQM-YKSKL--KALYMYTGGFYTYSIFALIFWETRRSDFGVSMSHHVATAILIVLS 170

Query: 402 INIQSCIFFCIIRLTSELSTPFTNQRWIFLTSG-LSHGHKKVVYSTLVFAVLFSIVRNWI 578
            NI+      ++    + S        IFL  G +S        ++  +  L  I+   I
Sbjct: 171 YNIRFARVGSVVLAIHDASD-------IFLEIGKMSKYSGAEALASFRYLCLSWIILRLI 223

Query: 579 IVPYWIMVYFDYGTEAHLQSKSINHFLD-----YVWLGCAGVLDILNIYWGPGVYRSGRR 743
             P+W++    Y     L  +   H +D     Y++      L +L+IYW   +YR   +
Sbjct: 224 YYPFWVLWSTSYEVLQTLDKEK--HKVDGPIYYYIFNSLLFCLLVLHIYWWVLIYRMLVK 281

Query: 744 AFQA 755
             QA
Sbjct: 282 QIQA 285
>sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit)
          Length = 1581

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = -1

Query: 786  LSFLLKKLDGRLGMHDAQSDILQDPNRYLECLRLQ 682
            LS LL KL G LG+H A +  L +  R LE LRLQ
Sbjct: 1493 LSELLVKL-GSLGVHQAPAQTLNETQRALESLRLQ 1526
>sp|Q96G23|LASS2_HUMAN LAG1 longevity assurance homolog 2 (Tumor metastasis-suppressor
           gene 1 protein) (SP260)
          Length = 380

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +3

Query: 537 LVFAVLFSIVRNWIIVPYWIMVYFDYGTEAHLQSKSINHFLDYVWLGCAGVLDILNIYWG 716
           +VFA++F I R  +I+P+WI+    + T  +        F  Y +    GVL +L+I+W 
Sbjct: 266 IVFAIVFIITR-LVILPFWIL----HCTLVYPLELYPAFFGYYFFNSMMGVLQLLHIFWA 320

Query: 717 PGVYRSGRR 743
             + R   +
Sbjct: 321 YLILRMAHK 329
>sp|O59735|YHXF_SCHPO Hypothetical protein C3E17.15c in chromosome II
          Length = 384

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 24/177 (13%)
 Frame = +3

Query: 291 VGYFLCDMISMPMYWRGRSLIIFL-------------IHHAFSAGAFLYAINIQSCIFFC 431
           VG F    +    YW  ++L++ L             +HH  +    L  I +     F 
Sbjct: 190 VGSFKAFYLIEAAYWIQQALVLILQLEKPRKDFKELVVHHIIT----LLLIGLSYYFHFT 245

Query: 432 IIRLTSELSTPFTNQRWIFLTSGLSHGHKKVVYSTLVFAVLFSIVRNWIIVPYWI---MV 602
            I L   + T  T+  W+ L+  L++ +  +VY   V  V       WI + +++   ++
Sbjct: 246 WIGLAVFI-TMDTSDIWLALSKCLNYVNTVIVYPIFVIFVFV-----WIYMRHYLNFKIM 299

Query: 603 YFDYGTEAHLQSKSINHFLDY--------VWLGCAGVLDILNIYWGPGVYRSGRRAF 749
           +  +GT   + S  ++   +         V L     L ++NIYW   + R G RAF
Sbjct: 300 WAVWGTMRTINSFDLDWAAEQYKCWISRDVTLILLTALQLVNIYWLILILRIGYRAF 356
>sp|Q99PE7|ABCG5_RAT ATP-binding cassette sub-family G member 5 (Sterolin-1)
          Length = 652

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
 Frame = +3

Query: 384 GAFLYAINIQSCIFFCIIRLTSEL-STPFTNQRWIFLTSGLSHGHKKVVYSTLVFAVLFS 560
           GA  Y   + +   F ++R  S+  S     Q+W  L + + H     +  ++V  V+FS
Sbjct: 429 GATPYTGMLNAVNLFPMLRAVSDQESQDGLYQKWQMLLAYVLHA----LPFSIVATVIFS 484

Query: 561 IVRNWIIVPYWIMVYFDYGTEAHLQSKSINHFLDYVWLGCAGVLDILN 704
            V  W +  Y  +  F Y + A L    I  FL  V LG     +I+N
Sbjct: 485 SVCYWTLGLYPEVARFGYFSAALLAPHLIGEFLTLVLLGMVQNPNIVN 532
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,633,410
Number of Sequences: 369166
Number of extensions: 1826795
Number of successful extensions: 4326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4323
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)