Planaria EST Database


DrC_01202

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01202
         (853 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CGC7|SYEP_MOUSE  Bifunctional aminoacyl-tRNA synthetase...   235   1e-61
sp|P07814|SYEP_HUMAN  Bifunctional aminoacyl-tRNA synthetase...   233   5e-61
sp|P28668|SYEP_DROME  Bifunctional aminoacyl-tRNA synthetase...   211   3e-54
sp|O13775|SYEC_SCHPO  Probable glutamyl-tRNA synthetase, cyt...   119   8e-27
sp|P46655|SYEC_YEAST  Glutamyl-tRNA synthetase, cytoplasmic ...   104   3e-22
sp|Q8Z8F8|SYQ_SALTI  Glutaminyl-tRNA synthetase (Glutamine--...    49   2e-05
sp|Q8ZQX5|SYQ_SALTY  Glutaminyl-tRNA synthetase (Glutamine--...    48   3e-05
sp|Q8X9H8|SYQ_ECO57  Glutaminyl-tRNA synthetase (Glutamine--...    45   3e-04
sp|Q87DU6|SYQ_XYLFT  Glutaminyl-tRNA synthetase (Glutamine--...    45   3e-04
sp|Q83LY4|SYQ_SHIFL  Glutaminyl-tRNA synthetase (Glutamine--...    44   7e-04
>sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
            synthetase (Glutamate--tRNA ligase); Prolyl-tRNA
            synthetase (Proline--tRNA ligase)]
          Length = 1512

 Score =  235 bits (600), Expect = 1e-61
 Identities = 120/247 (48%), Positives = 168/247 (68%)
 Frame = +1

Query: 73   KKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYVE 252
            KK  DP+ PRY AL   +K +V V ++D ++  K+ V +HPKN  +G K +W++P V++E
Sbjct: 497  KKVIDPVAPRYVALL--KKEVVPVNVLDAQEEMKE-VARHPKNPDVGLKPVWYSPKVFIE 553

Query: 253  MNDAVDFVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDRDFKKTQKITWMPLG 432
              DA  F EG  VTFINWGNI ITKIH+N++  IT ++ KLNL ++D+KKT KITW+   
Sbjct: 554  GADAETFSEGEMVTFINWGNINITKIHKNADGKITSLDAKLNLENKDYKKTTKITWLA-- 611

Query: 433  INDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGEI 612
              +   +  IP   + Y+++I+K VLGKD+DFK ++NK+SK EE ++GD  LK+LKKG+I
Sbjct: 612  --ESTHALPIPAVCVTYEHLITKPVLGKDEDFKQYINKDSKHEELMLGDPCLKDLKKGDI 669

Query: 613  IQLQRRGFFICDEEYQEKCKVTGNELPLVLINIPEGNTKERPTVGMKQKSVPNSSKPSSG 792
            IQLQRRGFFICD+ Y+     +  E P +LI IP+G+TKE PT G K+K+    SK  + 
Sbjct: 670  IQLQRRGFFICDQPYEPVSPYSCREAPCILIYIPDGHTKEMPTSGSKEKTKVEISKKETS 729

Query: 793  DHIDKER 813
                KER
Sbjct: 730  S-APKER 735

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   FVLAQGFGRANVVMEWDKLWASNKKVI 83
           F+ AQG  R+ V MEWDK+WA NKKVI
Sbjct: 474 FIAAQGSSRSVVNMEWDKIWAFNKKVI 500
>sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
            synthetase (Glutamate--tRNA ligase); Prolyl-tRNA
            synthetase (Proline--tRNA ligase)]
          Length = 1440

 Score =  233 bits (594), Expect = 5e-61
 Identities = 119/260 (45%), Positives = 172/260 (66%)
 Frame = +1

Query: 73   KKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYVE 252
            KK  DP+ PRY AL   +K ++ V + + ++  K+ V KHPKN  +G K +W++P V++E
Sbjct: 425  KKVIDPVAPRYVALL--KKEVIPVNVPEAQEEMKE-VAKHPKNPEVGLKPVWYSPKVFIE 481

Query: 253  MNDAVDFVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDRDFKKTQKITWMPLG 432
              DA  F EG  VTFINWGN+ ITKIH+N++  I  ++ K NL ++D+KKT K+TW+   
Sbjct: 482  GADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKFNLENKDYKKTTKVTWLA-- 539

Query: 433  INDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGEI 612
              +   +  IP+  + Y+++I+K VLGKD+DFK ++NKNSK EE ++GD  LK+LKKG+I
Sbjct: 540  --ETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDI 597

Query: 613  IQLQRRGFFICDEEYQEKCKVTGNELPLVLINIPEGNTKERPTVGMKQKSVPNSSKPSSG 792
            IQLQRRGFFICD+ Y+     +  E P VLI IP+G+TKE PT G K+K+   ++K  + 
Sbjct: 598  IQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTKVEATKNETS 657

Query: 793  DHIDKERSSNLKQTNTTESK 852
                KER +     N T S+
Sbjct: 658  APF-KERPTPSLNNNCTTSE 676

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   FVLAQGFGRANVVMEWDKLWASNKKVI 83
           F+ AQG  R+ V MEWDK+WA NKKVI
Sbjct: 402 FIAAQGSSRSVVNMEWDKIWAFNKKVI 428
>sp|P28668|SYEP_DROME Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
            synthetase (Glutamate--tRNA ligase); Prolyl-tRNA
            synthetase (Proline--tRNA ligase)]
          Length = 1714

 Score =  211 bits (536), Expect = 3e-54
 Identities = 113/258 (43%), Positives = 160/258 (62%), Gaps = 5/258 (1%)
 Frame = +1

Query: 73   KKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYVE 252
            KK  DPI PRYTAL   ++  V+V +   K +E+  V  HPK++++GKK +   P +Y++
Sbjct: 503  KKVIDPIAPRYTALEKEKR--VIVNVAGAK-VERIQVSVHPKDESLGKKTVLLGPRIYID 559

Query: 253  MNDAVDFVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDRDFKKTQKITWMPLG 432
              DA    EG N TFINWGNILI K+++++  NIT ++  LNL ++DFKKT K+TW  L 
Sbjct: 560  YVDAEALKEGENATFINWGNILIRKVNKDASGNITSVDAALNLENKDFKKTLKLTW--LA 617

Query: 433  INDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGEI 612
            + D+  ++  P   +++DNIISK VLGKD+DFK F+   ++ E  ++GD ELK  KKG+I
Sbjct: 618  VEDDPSAYP-PTFCVYFDNIISKAVLGKDEDFKQFIGHKTRDEVPMLGDPELKKCKKGDI 676

Query: 613  IQLQRRGFFICDEEYQEKCKVTGNELPLVLINIPEGNTKERPTVGMK-----QKSVPNSS 777
            IQLQRRGFF  D  Y      T    P+VL +IP+G+TK+ PT G+K      K+   +S
Sbjct: 677  IQLQRRGFFKVDVAYAPPSGYTNVPSPIVLFSIPDGHTKDVPTSGLKVNAPDAKATKKAS 736

Query: 778  KPSSGDHIDKERSSNLKQ 831
             P S      E  S + Q
Sbjct: 737  SPVSSSGQASELDSQISQ 754

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   FVLAQGFGRANVVMEWDKLWASNKKVI 83
           F++AQG  ++ V M WDK+WA NKKVI
Sbjct: 480 FIIAQGSSKSVVFMNWDKIWAFNKKVI 506
>sp|O13775|SYEC_SCHPO Probable glutamyl-tRNA synthetase, cytoplasmic (Glutamate--tRNA
            ligase) (GluRS)
          Length = 716

 Score =  119 bits (299), Expect = 8e-27
 Identities = 77/236 (32%), Positives = 131/236 (55%), Gaps = 2/236 (0%)
 Frame = +1

Query: 34   TL*WSGINYGLLIKKSFDPIVPRYTAL-SGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAI 210
            TL W+  ++    KK  DP+ PR+TA+ SG      +V        E +   +H KN  +
Sbjct: 495  TLDWT--SFWATNKKIIDPVAPRHTAVESGDVVKATIVNGPAAPYAEDR--PRHKKNPEL 550

Query: 211  GKKAIWFTPSVYVEMNDAVDFVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDR 390
            G K   F   + +E  DA  F +   VT ++WGN  + +I+R++   +T ++ +L+L D 
Sbjct: 551  GNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYVREINRDASGKVTSLKLELHL-DG 609

Query: 391  DFKKTQ-KITWMPLGINDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEEC 567
            DFKKT+ K+TW+    + E K+   P+  + +D +I+K+ L + +++K+FL   ++    
Sbjct: 610  DFKKTEKKVTWL---ADTEDKT---PVDLVDFDYLITKDKLEEGENYKDFLTPQTEFHSP 663

Query: 568  LIGDIELKNLKKGEIIQLQRRGFFICDEEYQEKCKVTGNELPLVLINIPEGNTKER 735
            +  D+ +KNLKKG+IIQ++R+G++I D        V  +    VL NIP+G T  R
Sbjct: 664  VFADVGIKNLKKGDIIQVERKGYYIVD--------VPFDGTQAVLFNIPDGKTVNR 711

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 3   FVLAQGFGRANVVMEWDKLWASNKKVI 83
           ++++QG  +  + ++W   WA+NKK+I
Sbjct: 483 YIVSQGPSKNILTLDWTSFWATNKKII 509
>sp|P46655|SYEC_YEAST Glutamyl-tRNA synthetase, cytoplasmic (Glutamate--tRNA ligase)
            (GluRS) (P85)
          Length = 724

 Score =  104 bits (260), Expect = 3e-22
 Identities = 68/219 (31%), Positives = 122/219 (55%), Gaps = 1/219 (0%)
 Frame = +1

Query: 73   KKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYVE 252
            KK  DPI PR+TA+    K + L      ++ + +   KH KN A+G+K + +   + V+
Sbjct: 518  KKVIDPIAPRHTAIVNPVK-IHLEGSEAPQEPKIEMKPKHKKNPAVGEKKVIYYKDIVVD 576

Query: 253  MNDAVDFVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDRDFKKTQ-KITWMPL 429
             +DA        VT ++WGN++ITK  +N + ++     KLNL + DFKKT+ K+TW+  
Sbjct: 577  KDDADVINVDEEVTLMDWGNVIITK--KNDDGSMV---AKLNL-EGDFKKTKHKLTWLA- 629

Query: 430  GINDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGE 609
                + K   +P+  + +D++I+K+ L +D+ F++FL   ++     I D+ +K++K G+
Sbjct: 630  ----DTKDV-VPVDLVDFDHLITKDRLEEDESFEDFLTPQTEFHTDAIADLNVKDMKIGD 684

Query: 610  IIQLQRRGFFICDEEYQEKCKVTGNELPLVLINIPEGNT 726
            IIQ +R+G++  D        +  +  P V   IP+G +
Sbjct: 685  IIQFERKGYYRLD-------ALPKDGKPYVFFTIPDGKS 716

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 3   FVLAQGFGRANVVMEWDKLWASNKKVI 83
           FVL+QG  R  + +EW+ +WA NKKVI
Sbjct: 495 FVLSQGPSRNVINLEWNLIWAFNKKVI 521
>sp|Q8Z8F8|SYQ_SALTI Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 555

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 14/219 (6%)
 Frame = +1

Query: 70  IKKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYV 249
           I++  +   PR  A+    K  ++++   + + E   +  HP    +G + + F+  +++
Sbjct: 332 IREDLNENAPRAMAVIDPVK--LVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWI 389

Query: 250 EMNDAVD--------FVEGTNVTFINWGNILITKIHRNSENNITFI-----EGKLNLSDR 390
           +  D  +         V G  V   N   I   ++ +++E NIT I        L+    
Sbjct: 390 DRADFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPA 449

Query: 391 DFKKTQKIT-WMPLGINDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEEC 567
           D +K + +  W+ +       + ++PI    YD + S    G  +DF + +N  S   + 
Sbjct: 450 DGRKVKGVIHWVSV-------AHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQ 502

Query: 568 LIGDIELKNLKKGEIIQLQRRGFFICDEEYQEKCKVTGN 684
             G+  LK    G+  Q +R G+F  D  Y    K+  N
Sbjct: 503 GYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVFN 541
>sp|Q8ZQX5|SYQ_SALTY Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 555

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
 Frame = +1

Query: 70  IKKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFVDKHPKNDAIGKKAIWFTPSVYV 249
           I++  +   PR  A+    K  ++++   + + E   +  HP    +G + + F+  +++
Sbjct: 332 IREDLNENAPRAMAVIDPVK--LVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWI 389

Query: 250 EMNDAVD--------FVEGTNVTFINWGNILITKIHRNSENNITFI-----EGKLNLSDR 390
           +  D  +         V G  V   N   I   ++ +++E NIT I        L+    
Sbjct: 390 DRADFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPA 449

Query: 391 DFKKTQKIT-WMPLGINDEVKSFSIPISSIFYDNIISKNVLGKDDDFKNFLNKNSKKEEC 567
           D +K + +  W+         + ++PI    YD + S    G  +DF + +N  S   + 
Sbjct: 450 DGRKVKGVIHWVSA-------AHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQ 502

Query: 568 LIGDIELKNLKKGEIIQLQRRGFFICDEEYQEKCKVTGN 684
             G+  LK    G+  Q +R G+F  D  Y    K+  N
Sbjct: 503 GYGEPSLKAAVAGKAFQFEREGYFCLDSRYATADKLVFN 541
>sp|Q8X9H8|SYQ_ECO57 Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 554

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 14/170 (8%)
 Frame = +1

Query: 190 HPKNDAIGKKAIWFTPSVYVEMNDAVD--------FVEGTNVTFINWGNILITKIHRNSE 345
           HP    +G + + F+  ++++ +D  +         V G  V   N   I   ++ +++E
Sbjct: 369 HPNKPEMGSRQVPFSGEIWIDRSDFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE 428

Query: 346 NNITFI-----EGKLNLSDRDFKKTQKIT-WMPLGINDEVKSFSIPISSIFYDNIISKNV 507
            NIT I        L+    D +K + +  W+         + ++P+    YD + S   
Sbjct: 429 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA-------AHALPVEIRLYDRLFSVPN 481

Query: 508 LGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGEIIQLQRRGFFICDEEY 657
            G  DDF + +N  S   +    +  LK+   G+  Q +R G+F  D  +
Sbjct: 482 PGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRH 531
>sp|Q87DU6|SYQ_XYLFT Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 580

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 25/218 (11%)
 Frame = +1

Query: 70  IKKSFDPIVPRYTALSGSEKSLVLVKIIDKKDIEKQFV-DKHPKNDAIGKKAIWFTPSVY 246
           ++++ D I PR  A     K LVL  + +  D E+Q +   HPK+D  G + + F+  ++
Sbjct: 356 LRENLDTIAPRRMATIAPMK-LVLTNLAE--DHEEQLIFPNHPKDDTQGTRTVPFSRELW 412

Query: 247 VEMNDAVD--------FVEGTNVTFINWGNILITKIHRNSENNITFIEGKLNLSDR---- 390
           +E +D  +         + G  V     G   I ++ +N+E ++  + G L+ + R    
Sbjct: 413 IERDDFSEAPPKGWKRLIPGGEVRLRGAGIARIDEVVKNAEGHVIALHGWLDPTSRPGME 472

Query: 391 --DFKKTQKITWM--PLGINDEVKSFSIPISSIFYDNIISKNVLGKDDD------FKNFL 540
               K    I W+  P  +  E++          YD + S   + K DD      +++FL
Sbjct: 473 GAHRKVKGTIHWVSAPHAVAAEIR---------LYDRLFS---IEKPDDNTDGKTYRDFL 520

Query: 541 NKNSKKEECLIGDIE--LKNLKKGEIIQLQRRGFFICD 648
           N +SK+   + G IE            Q +R G+F+ D
Sbjct: 521 NPDSKR--VVHGYIEPAAAQTAPEHAFQFERLGYFVTD 556
>sp|Q83LY4|SYQ_SHIFL Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS)
          Length = 554

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 14/170 (8%)
 Frame = +1

Query: 190 HPKNDAIGKKAIWFTPSVYVEMNDAVD--------FVEGTNVTFINWGNILITKIHRNSE 345
           HP    +G + + F+  ++++  D  +         V G  V   N   I   ++ +++E
Sbjct: 369 HPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE 428

Query: 346 NNITFI-----EGKLNLSDRDFKKTQKIT-WMPLGINDEVKSFSIPISSIFYDNIISKNV 507
            NIT I        L+    D +K + +  W+         + ++P+    YD + S   
Sbjct: 429 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSA-------AHALPVEIRLYDRLFSVPN 481

Query: 508 LGKDDDFKNFLNKNSKKEECLIGDIELKNLKKGEIIQLQRRGFFICDEEY 657
            G  DDF + +N  S   +    +  LK+   G+  Q +R G+F  D  +
Sbjct: 482 PGAADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRH 531
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,358,103
Number of Sequences: 369166
Number of extensions: 1726286
Number of successful extensions: 4831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4814
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)