Planaria EST Database


DrC_01201

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01201
         (816 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57705|TRM1_HALSA  N(2),N(2)-dimethylguanosine tRNA methy...    32   2.1  
sp|Q00383|YCF1_EPIVI  Hypothetical 208 kDa protein ycf1 (ORF...    30   6.1  
sp|Q97WH0|RAD50_SULSO  DNA double-strand break repair rad50 ...    30   6.1  
sp|P13828|MSP1_PLAYO  Merozoite surface protein 1 precursor ...    30   7.9  
sp|O06637|FLAD_METVO  Putative flagella-related protein D          30   7.9  
sp|Q9ZMV7|TOP1_HELPJ  DNA topoisomerase I (Omega-protein) (R...    30   7.9  
sp|P55991|TOP1_HELPY  DNA topoisomerase I (Omega-protein) (R...    30   7.9  
>sp|P57705|TRM1_HALSA N(2),N(2)-dimethylguanosine tRNA methyltransferase
           (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA
           2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 371

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 485 TRILFENSHHYSQLHCPLDLCFWNSSISIQYAVHVFHCQQIL 360
           T IL   S HY + +  LD    +++ +++   HV+HCQQ L
Sbjct: 201 TPILSHVSDHYVRTYLELDHRATDANAAVEQVGHVYHCQQCL 242
>sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF 1738)
          Length = 1738

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 314 IFSNLENYDEEIEPEIKFVDNEIRERHIESISMNSKSKDQVDNVIENNDDCSRIESEFHY 493
           + + LE    E    I  +D++IR R  +S+ + + +KD  D+ +  ND     E   HY
Sbjct: 641 LITELEQQSGEYYENIP-IDHQIRSRKSKSVVIFTTTKDNTDSNLYTNDQADTDEVLIHY 699
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 302 EVQSIFSNLENYDEEIEPEIKFVDNEIR--ERHIESISMNSKSKDQVDNVIEN-NDDCSR 472
           E +S    LE    E+E E+K + NE+   ER    +S N  S D V   ++  N++   
Sbjct: 444 EAKSYILQLELNKNELEEELKKITNELNKIEREYRRLSNNKASYDNVMRQLKKLNEEIEN 503

Query: 473 IESE 484
           + SE
Sbjct: 504 LHSE 507
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor (Merozoite surface antigens)
            (PMMSA) (230 kDa) (PY230)
          Length = 1772

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 293  ESLEVQSIFSNLENYDEEIEPEIKFVDNEIRERHIESISMNSKSK 427
            E  E + +  NLE Y +  E   +FV++    +HI SI++N+ +K
Sbjct: 1586 EKAEFEILTKNLEKYIQIDEKLDEFVEHAENNKHIASIALNNLNK 1630
>sp|O06637|FLAD_METVO Putative flagella-related protein D
          Length = 362

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 290 VESLEVQSIFSN--LENYDEEIEPEIKFVDNEIRERHIESISMNSKSKDQVDN 442
           ++ +E+  I ++  L  Y+EE+ PEI+ ++N   +  +++I+  + + D V N
Sbjct: 143 IDEIEISEIDTDDELPIYEEELIPEIELIENPEVDTEVDTINSENYNSDVVIN 195
>sp|Q9ZMV7|TOP1_HELPJ DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 736

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 377 EIRERHIESI---SMNSKSKDQVDNVIENNDDCSRIESEFHYHSTD 505
           EI E+H E I     ++  ++++DN+ +N  D  ++  +F+Y   D
Sbjct: 505 EILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMD 550
>sp|P55991|TOP1_HELPY DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 736

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 377 EIRERHIESI---SMNSKSKDQVDNVIENNDDCSRIESEFHYHSTD 505
           EI E+H E I     ++  ++++DN+ +N  D  ++  +F+Y   D
Sbjct: 505 EILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMD 550
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,477,212
Number of Sequences: 369166
Number of extensions: 1012104
Number of successful extensions: 3248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3244
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)