Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M15
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57705|TRM1_HALSA N(2),N(2)-dimethylguanosine tRNA methy... 32 2.1
sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF... 30 6.1
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 30 6.1
sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor ... 30 7.9
sp|O06637|FLAD_METVO Putative flagella-related protein D 30 7.9
sp|Q9ZMV7|TOP1_HELPJ DNA topoisomerase I (Omega-protein) (R... 30 7.9
sp|P55991|TOP1_HELPY DNA topoisomerase I (Omega-protein) (R... 30 7.9
>sp|P57705|TRM1_HALSA N(2),N(2)-dimethylguanosine tRNA methyltransferase
(tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA
2,2-dimethylguanosine-26 methyltransferase)
(tRNA(m(2,2)G26)dimethyltransferase)
Length = 371
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 485 TRILFENSHHYSQLHCPLDLCFWNSSISIQYAVHVFHCQQIL 360
T IL S HY + + LD +++ +++ HV+HCQQ L
Sbjct: 201 TPILSHVSDHYVRTYLELDHRATDANAAVEQVGHVYHCQQCL 242
>sp|Q00383|YCF1_EPIVI Hypothetical 208 kDa protein ycf1 (ORF 1738)
Length = 1738
Score = 30.4 bits (67), Expect = 6.1
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 314 IFSNLENYDEEIEPEIKFVDNEIRERHIESISMNSKSKDQVDNVIENNDDCSRIESEFHY 493
+ + LE E I +D++IR R +S+ + + +KD D+ + ND E HY
Sbjct: 641 LITELEQQSGEYYENIP-IDHQIRSRKSKSVVIFTTTKDNTDSNLYTNDQADTDEVLIHY 699
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 30.4 bits (67), Expect = 6.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 302 EVQSIFSNLENYDEEIEPEIKFVDNEIR--ERHIESISMNSKSKDQVDNVIEN-NDDCSR 472
E +S LE E+E E+K + NE+ ER +S N S D V ++ N++
Sbjct: 444 EAKSYILQLELNKNELEEELKKITNELNKIEREYRRLSNNKASYDNVMRQLKKLNEEIEN 503
Query: 473 IESE 484
+ SE
Sbjct: 504 LHSE 507
>sp|P13828|MSP1_PLAYO Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (230 kDa) (PY230)
Length = 1772
Score = 30.0 bits (66), Expect = 7.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 293 ESLEVQSIFSNLENYDEEIEPEIKFVDNEIRERHIESISMNSKSK 427
E E + + NLE Y + E +FV++ +HI SI++N+ +K
Sbjct: 1586 EKAEFEILTKNLEKYIQIDEKLDEFVEHAENNKHIASIALNNLNK 1630
>sp|O06637|FLAD_METVO Putative flagella-related protein D
Length = 362
Score = 30.0 bits (66), Expect = 7.9
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 290 VESLEVQSIFSN--LENYDEEIEPEIKFVDNEIRERHIESISMNSKSKDQVDN 442
++ +E+ I ++ L Y+EE+ PEI+ ++N + +++I+ + + D V N
Sbjct: 143 IDEIEISEIDTDDELPIYEEELIPEIELIENPEVDTEVDTINSENYNSDVVIN 195
>sp|Q9ZMV7|TOP1_HELPJ DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 736
Score = 30.0 bits (66), Expect = 7.9
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 377 EIRERHIESI---SMNSKSKDQVDNVIENNDDCSRIESEFHYHSTD 505
EI E+H E I ++ ++++DN+ +N D ++ +F+Y D
Sbjct: 505 EILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMD 550
>sp|P55991|TOP1_HELPY DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 736
Score = 30.0 bits (66), Expect = 7.9
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 377 EIRERHIESI---SMNSKSKDQVDNVIENNDDCSRIESEFHYHSTD 505
EI E+H E I ++ ++++DN+ +N D ++ +F+Y D
Sbjct: 505 EILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMD 550
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,477,212
Number of Sequences: 369166
Number of extensions: 1012104
Number of successful extensions: 3248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3244
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)