Planaria EST Database


DrC_01195

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01195
         (455 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    31   1.5  
sp|Q6PSC6|MATK_PHAVU  Maturase K (Intron maturase)                 30   1.9  
sp|Q9BBP4|CCSA_LOTJA  Cytochrome c biogenesis protein ccsA         30   3.3  
sp|Q6ENA8|CCSA_ORYNI  Cytochrome c biogenesis protein ccsA         29   4.3  
sp|P46659|CCSA_MAIZE  CYTOCHROME C BIOGENESIS PROTEIN CCSA         29   4.3  
sp|P12216|CCSA_TOBAC  Cytochrome c biogenesis protein ccsA         29   4.3  
sp|P12215|CCSA_ORYSA  Cytochrome c biogenesis protein ccsA         29   4.3  
sp|Q9MTI2|CCSA_OENHO  Cytochrome c biogenesis protein ccsA         29   5.6  
sp|Q8TWY1|SYA_METKA  Alanyl-tRNA synthetase (Alanine--tRNA l...    28   7.3  
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 79  YSPDLAPSDFFLFRKLKKYL 20
           YSPDLAP+D+ LF  L  Y+
Sbjct: 182 YSPDLAPTDYHLFLSLSDYM 201
>sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase)
          Length = 513

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -2

Query: 262 LHIVL*FFSNLRPRLDYLDHSSI----FPLFLECLIN*SSIFVRNVHVRRGKKFFHHDNA 95
           +H +  FF +   +L YL+H S     +P+ LE L+     ++++V      +FF +  +
Sbjct: 127 IHSIFPFFED---KLIYLNHKSDIRIPYPIHLEILVQILGYWIKDVSFFHVIRFFFYYYS 183

Query: 94  PAQTSYSPDLAPSDFFLFRKLKKYL 20
              + + P    S FF  R L+ +L
Sbjct: 184 NWNSLFPPKKGISTFFSKRNLRIFL 208
>sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein ccsA
          Length = 323

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNIE 200
           S+W N+ P+ TW F+T  +     HSR N  +E
Sbjct: 254 SYW-NWDPKETWAFITWTIFAIYLHSRKNKKLE 285
>sp|Q6ENA8|CCSA_ORYNI Cytochrome c biogenesis protein ccsA
          Length = 321

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
           S+W N+ P+ TW F+T  +     HSR N N
Sbjct: 251 SYW-NWDPKETWAFITWTIFAIYLHSRTNPN 280
>sp|P46659|CCSA_MAIZE CYTOCHROME C BIOGENESIS PROTEIN CCSA
          Length = 321

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
           S+W N+ P+ TW F+T  +     HSR N N
Sbjct: 250 SYW-NWDPKETWAFITWTIFAIYLHSRKNPN 279
>sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA
          Length = 313

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNI 197
           S+W N+ P+ TW F+T ++     H+R N N+
Sbjct: 242 SYW-NWDPKETWAFITWIVFAIYLHTRTNRNL 272
>sp|P12215|CCSA_ORYSA Cytochrome c biogenesis protein ccsA
          Length = 321

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
           S+W N+ P+ TW F+T  +     HSR N N
Sbjct: 251 SYW-NWDPKETWAFITWTIFAIYLHSRTNPN 280
>sp|Q9MTI2|CCSA_OENHO Cytochrome c biogenesis protein ccsA
          Length = 319

 Score = 28.9 bits (63), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNIE 200
           S+W N+ P+ TW F+T  +     H+R N N +
Sbjct: 250 SYW-NWDPKETWAFITWTMFAIYLHTRTNPNFQ 281
>sp|Q8TWY1|SYA_METKA Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 915

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 112 KIFFLDGHGRFSRICWISLSSIQGTTEILKNGPDNLDEVV-----NWKKIIKRYVTIRNI 276
           +I F  G     RI W +   ++ T E+L+  P+NL + V      WK+  KR   I  +
Sbjct: 737 RIRFAAGEAALERI-WETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKR---IERL 792

Query: 277 EEESVQ 294
           E E V+
Sbjct: 793 ERELVE 798
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,997,751
Number of Sequences: 369166
Number of extensions: 1084604
Number of successful extensions: 2723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)