Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K20
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 31 1.5
sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase) 30 1.9
sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein ccsA 30 3.3
sp|Q6ENA8|CCSA_ORYNI Cytochrome c biogenesis protein ccsA 29 4.3
sp|P46659|CCSA_MAIZE CYTOCHROME C BIOGENESIS PROTEIN CCSA 29 4.3
sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA 29 4.3
sp|P12215|CCSA_ORYSA Cytochrome c biogenesis protein ccsA 29 4.3
sp|Q9MTI2|CCSA_OENHO Cytochrome c biogenesis protein ccsA 29 5.6
sp|Q8TWY1|SYA_METKA Alanyl-tRNA synthetase (Alanine--tRNA l... 28 7.3
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 30.8 bits (68), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 79 YSPDLAPSDFFLFRKLKKYL 20
YSPDLAP+D+ LF L Y+
Sbjct: 182 YSPDLAPTDYHLFLSLSDYM 201
>sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase)
Length = 513
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = -2
Query: 262 LHIVL*FFSNLRPRLDYLDHSSI----FPLFLECLIN*SSIFVRNVHVRRGKKFFHHDNA 95
+H + FF + +L YL+H S +P+ LE L+ ++++V +FF + +
Sbjct: 127 IHSIFPFFED---KLIYLNHKSDIRIPYPIHLEILVQILGYWIKDVSFFHVIRFFFYYYS 183
Query: 94 PAQTSYSPDLAPSDFFLFRKLKKYL 20
+ + P S FF R L+ +L
Sbjct: 184 NWNSLFPPKKGISTFFSKRNLRIFL 208
>sp|Q9BBP4|CCSA_LOTJA Cytochrome c biogenesis protein ccsA
Length = 323
Score = 29.6 bits (65), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNIE 200
S+W N+ P+ TW F+T + HSR N +E
Sbjct: 254 SYW-NWDPKETWAFITWTIFAIYLHSRKNKKLE 285
>sp|Q6ENA8|CCSA_ORYNI Cytochrome c biogenesis protein ccsA
Length = 321
Score = 29.3 bits (64), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
S+W N+ P+ TW F+T + HSR N N
Sbjct: 251 SYW-NWDPKETWAFITWTIFAIYLHSRTNPN 280
>sp|P46659|CCSA_MAIZE CYTOCHROME C BIOGENESIS PROTEIN CCSA
Length = 321
Score = 29.3 bits (64), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
S+W N+ P+ TW F+T + HSR N N
Sbjct: 250 SYW-NWDPKETWAFITWTIFAIYLHSRKNPN 279
>sp|P12216|CCSA_TOBAC Cytochrome c biogenesis protein ccsA
Length = 313
Score = 29.3 bits (64), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNI 197
S+W N+ P+ TW F+T ++ H+R N N+
Sbjct: 242 SYW-NWDPKETWAFITWIVFAIYLHTRTNRNL 272
>sp|P12215|CCSA_ORYSA Cytochrome c biogenesis protein ccsA
Length = 321
Score = 29.3 bits (64), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGN 194
S+W N+ P+ TW F+T + HSR N N
Sbjct: 251 SYW-NWDPKETWAFITWTIFAIYLHSRTNPN 280
>sp|Q9MTI2|CCSA_OENHO Cytochrome c biogenesis protein ccsA
Length = 319
Score = 28.9 bits (63), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 102 SWWKNFFPRRTWTFLTNMLDQFIKHSRNNGNIE 200
S+W N+ P+ TW F+T + H+R N N +
Sbjct: 250 SYW-NWDPKETWAFITWTMFAIYLHTRTNPNFQ 281
>sp|Q8TWY1|SYA_METKA Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 915
Score = 28.5 bits (62), Expect = 7.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 112 KIFFLDGHGRFSRICWISLSSIQGTTEILKNGPDNLDEVV-----NWKKIIKRYVTIRNI 276
+I F G RI W + ++ T E+L+ P+NL + V WK+ KR I +
Sbjct: 737 RIRFAAGEAALERI-WETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKR---IERL 792
Query: 277 EEESVQ 294
E E V+
Sbjct: 793 ERELVE 798
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,997,751
Number of Sequences: 369166
Number of extensions: 1084604
Number of successful extensions: 2723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)