Planaria EST Database


DrC_01189

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01189
         (902 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQA3|DHSB_MOUSE  Succinate dehydrogenase [ubiquinone] i...   266   4e-71
sp|P21912|DHSB_HUMAN  Succinate dehydrogenase [ubiquinone] i...   266   8e-71
sp|P21914|DHSB_DROME  Succinate dehydrogenase [ubiquinone] i...   256   8e-68
sp|Q09545|DHSB_CAEEL  Putative succinate dehydrogenase [ubiq...   253   7e-67
sp|P21801|DHSB_YEAST  Succinate dehydrogenase [ubiquinone] i...   248   2e-65
sp|Q6FWS8|DHSB_CANGA  Succinate dehydrogenase [ubiquinone] i...   243   7e-64
sp|Q75CI4|DHSB_ASHGO  Succinate dehydrogenase [ubiquinone] i...   241   3e-63
sp|Q92JJ8|DHSB_RICCN  Succinate dehydrogenase iron-sulfur pr...   235   1e-61
sp|P21911|DHSB_SCHPO  Succinate dehydrogenase [ubiquinone] i...   234   3e-61
sp|P80480|DHSB_RECAM  Succinate dehydrogenase [ubiquinone] i...   234   3e-61
>sp|Q9CQA3|DHSB_MOUSE Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (Ip) (Iron-sulfur subunit of
           complex II)
          Length = 282

 Score =  266 bits (681), Expect = 4e-71
 Identities = 121/164 (73%), Positives = 143/164 (87%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLAC   ID + SK +KIYPLPHM+V+KDLVPD+SNFYAQY+ IEPYLKKK+E++   GK
Sbjct: 112 TLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE--GK 169

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
           +   QS++DR+ LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM+DSRD+FT
Sbjct: 170 QQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 229

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
           +ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK M+A
Sbjct: 230 EERLAKLQDPFSVYRCHTIMNCTQTCPKGLNPGKAIAEIKKMMA 273
>sp|P21912|DHSB_HUMAN Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (Ip) (Iron-sulfur subunit of
           complex II)
          Length = 280

 Score =  266 bits (679), Expect = 8e-71
 Identities = 120/164 (73%), Positives = 143/164 (87%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLAC   ID N +K +KIYPLPHM+V+KDLVPD+SNFYAQY+ IEPYLKKK+E++   GK
Sbjct: 110 TLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE--GK 167

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
           +   QS+++R+ LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM+DSRD+FT
Sbjct: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
           +ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK M+A
Sbjct: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP)
          Length = 297

 Score =  256 bits (653), Expect = 8e-68
 Identities = 117/166 (70%), Positives = 138/166 (83%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLACI  ID NTSK+ K+YPLPHM+VV+DLVPDM+NFY QYR I+P+L++KNE     GK
Sbjct: 117 TLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGK 176

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
               QSV+DR  LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW++DSRDE +
Sbjct: 177 AQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENS 236

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLAKL 515
            ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK +L+ L
Sbjct: 237 AERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 282
>sp|Q09545|DHSB_CAEEL Putative succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP) (IP subunit of complex II)
          Length = 298

 Score =  253 bits (645), Expect = 7e-67
 Identities = 114/165 (69%), Positives = 139/165 (84%)
 Frame = +3

Query: 12  RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
           + TLACIC ID +TSK+TKIYPLPHM VVKDLVPDM+ FYAQY  I+P+++KK      +
Sbjct: 122 QNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTP--LTL 179

Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
           G+K  +QSV +RD LDGLYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRW++DSRD+
Sbjct: 180 GEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDD 239

Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVML 506
           +  ERL ++++ +SA++CHTIMNCTKTCPK LNP  AIG+IK +L
Sbjct: 240 YATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLL 284
>sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP)
          Length = 266

 Score =  248 bits (632), Expect = 2e-65
 Identities = 115/166 (69%), Positives = 135/166 (81%)
 Frame = +3

Query: 12  RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
           R TLACIC ID+N SK  KIYPLPHM +VKDLVPD++NFY QY+ I+PYL++ +  +   
Sbjct: 102 RNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPKD-- 159

Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
           G +V  QS++DR  LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+
Sbjct: 160 GTEV-LQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQ 218

Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
            TK R   LNN  S YRCHTIMNCT+TCPKGLNPGLAI +IK  LA
Sbjct: 219 ATKTRKAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIKKSLA 264
>sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP)
          Length = 253

 Score =  243 bits (619), Expect = 7e-64
 Identities = 113/164 (68%), Positives = 134/164 (81%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLAC+C ID++ SKTTKIYPLPHM +VKDLVPD++ FY QY+ I+PYL++  +  AD GK
Sbjct: 91  TLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQR-TDYPAD-GK 148

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
           +V  QS+ DR  LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+ T
Sbjct: 149 EV-LQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWLIDSRDQAT 207

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
           K R   L N  S YRCHTIMNCT+TCPKGLNPG +I +IK  LA
Sbjct: 208 KARRTMLQNSMSLYRCHTIMNCTRTCPKGLNPGRSIAEIKKQLA 251
>sp|Q75CI4|DHSB_ASHGO Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP)
          Length = 261

 Score =  241 bits (614), Expect = 3e-63
 Identities = 113/166 (68%), Positives = 132/166 (79%)
 Frame = +3

Query: 12  RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
           R TLAC+C ID+  +K  KIYPLPHM+VVKDLVPD++NFY QY+ I+PYL+K ++  AD 
Sbjct: 97  RNTLACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQKASK-PAD- 154

Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
             + + QS+ DR  LDGLYECILCACCST+CPSYWWN ++YLGPAVLMQAYRWMVDSRD 
Sbjct: 155 -GREHLQSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQAYRWMVDSRDG 213

Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
               R EQL N  S YRCHTIMNCT+TCPKGLNPG AI +IK  LA
Sbjct: 214 AGAGRREQLQNAMSVYRCHTIMNCTRTCPKGLNPGKAIAEIKKALA 259
>sp|Q92JJ8|DHSB_RICCN Succinate dehydrogenase iron-sulfur protein
          Length = 261

 Score =  235 bits (599), Expect = 1e-61
 Identities = 112/165 (67%), Positives = 132/165 (80%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLACI  I+ + S   KIYPLPHM VVKDLVPDMS+FYAQY  IEP+LK  +   ++  +
Sbjct: 97  TLACIKPIE-DISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSER 155

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
               QS+KDR+ LDGLYECILCACCSTSCPSYWWNGDKYLGPA+L+QAYRW+ DSRD+ T
Sbjct: 156 ---LQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNT 212

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLAK 512
            ERLE L + +  YRCHTIMNCTKTCPKGLNP  AIG+IK ++A+
Sbjct: 213 GERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIAE 257
>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
           mitochondrial precursor (IP)
          Length = 252

 Score =  234 bits (596), Expect = 3e-61
 Identities = 108/164 (65%), Positives = 130/164 (79%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLACICNI K+ +K TKIYPLPH  +VKDLVPD++ FY QY+ IEP+L+  N  +     
Sbjct: 92  TLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPK----D 146

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
           K  YQS  DR  LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+ T
Sbjct: 147 KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQAT 206

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
            +RL+ + N  S YRCHTIMNC +TCPKGLNPGLAI ++K ++A
Sbjct: 207 AKRLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKALMA 250
>sp|P80480|DHSB_RECAM Succinate dehydrogenase [ubiquinone] iron-sulfur protein (IP)
          Length = 239

 Score =  234 bits (596), Expect = 3e-61
 Identities = 110/160 (68%), Positives = 129/160 (80%)
 Frame = +3

Query: 18  TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
           TLACI +ID N  K  KIYPLPHMH++KDLVPD+SNFYAQY+ IEP++K   E + D   
Sbjct: 78  TLACIKSIDTN-KKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKT-TEKKLD--- 132

Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
           K  YQS  DR+ LDGLYEC+LCACCSTSCPSYWWN DKYLGPAVL+QAYRW+VDSRD+ T
Sbjct: 133 KEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGT 192

Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIK 497
           +ERL+ L + +  YRCHTI+NCTKTCPK LNP  AI +IK
Sbjct: 193 RERLQYLEDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIK 232
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,643,513
Number of Sequences: 369166
Number of extensions: 1899678
Number of successful extensions: 5800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5743
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)