Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_J15
(902 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQA3|DHSB_MOUSE Succinate dehydrogenase [ubiquinone] i... 266 4e-71
sp|P21912|DHSB_HUMAN Succinate dehydrogenase [ubiquinone] i... 266 8e-71
sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] i... 256 8e-68
sp|Q09545|DHSB_CAEEL Putative succinate dehydrogenase [ubiq... 253 7e-67
sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] i... 248 2e-65
sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] i... 243 7e-64
sp|Q75CI4|DHSB_ASHGO Succinate dehydrogenase [ubiquinone] i... 241 3e-63
sp|Q92JJ8|DHSB_RICCN Succinate dehydrogenase iron-sulfur pr... 235 1e-61
sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] i... 234 3e-61
sp|P80480|DHSB_RECAM Succinate dehydrogenase [ubiquinone] i... 234 3e-61
>sp|Q9CQA3|DHSB_MOUSE Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (Ip) (Iron-sulfur subunit of
complex II)
Length = 282
Score = 266 bits (681), Expect = 4e-71
Identities = 121/164 (73%), Positives = 143/164 (87%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLAC ID + SK +KIYPLPHM+V+KDLVPD+SNFYAQY+ IEPYLKKK+E++ GK
Sbjct: 112 TLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE--GK 169
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
+ QS++DR+ LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM+DSRD+FT
Sbjct: 170 QQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 229
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
+ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK M+A
Sbjct: 230 EERLAKLQDPFSVYRCHTIMNCTQTCPKGLNPGKAIAEIKKMMA 273
>sp|P21912|DHSB_HUMAN Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (Ip) (Iron-sulfur subunit of
complex II)
Length = 280
Score = 266 bits (679), Expect = 8e-71
Identities = 120/164 (73%), Positives = 143/164 (87%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLAC ID N +K +KIYPLPHM+V+KDLVPD+SNFYAQY+ IEPYLKKK+E++ GK
Sbjct: 110 TLACTRRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQE--GK 167
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
+ QS+++R+ LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWM+DSRD+FT
Sbjct: 168 QQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFT 227
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
+ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK M+A
Sbjct: 228 EERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMA 271
>sp|P21914|DHSB_DROME Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP)
Length = 297
Score = 256 bits (653), Expect = 8e-68
Identities = 117/166 (70%), Positives = 138/166 (83%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLACI ID NTSK+ K+YPLPHM+VV+DLVPDM+NFY QYR I+P+L++KNE GK
Sbjct: 117 TLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGK 176
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
QSV+DR LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW++DSRDE +
Sbjct: 177 AQYLQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENS 236
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLAKL 515
ERL +L + +S YRCHTIMNCT+TCPKGLNPG AI +IK +L+ L
Sbjct: 237 AERLNKLKDPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGL 282
>sp|Q09545|DHSB_CAEEL Putative succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP) (IP subunit of complex II)
Length = 298
Score = 253 bits (645), Expect = 7e-67
Identities = 114/165 (69%), Positives = 139/165 (84%)
Frame = +3
Query: 12 RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
+ TLACIC ID +TSK+TKIYPLPHM VVKDLVPDM+ FYAQY I+P+++KK +
Sbjct: 122 QNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTP--LTL 179
Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
G+K +QSV +RD LDGLYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRW++DSRD+
Sbjct: 180 GEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDD 239
Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVML 506
+ ERL ++++ +SA++CHTIMNCTKTCPK LNP AIG+IK +L
Sbjct: 240 YATERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLL 284
>sp|P21801|DHSB_YEAST Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP)
Length = 266
Score = 248 bits (632), Expect = 2e-65
Identities = 115/166 (69%), Positives = 135/166 (81%)
Frame = +3
Query: 12 RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
R TLACIC ID+N SK KIYPLPHM +VKDLVPD++NFY QY+ I+PYL++ + +
Sbjct: 102 RNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPKD-- 159
Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
G +V QS++DR LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+
Sbjct: 160 GTEV-LQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQ 218
Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
TK R LNN S YRCHTIMNCT+TCPKGLNPGLAI +IK LA
Sbjct: 219 ATKTRKAMLNNSMSLYRCHTIMNCTRTCPKGLNPGLAIAEIKKSLA 264
>sp|Q6FWS8|DHSB_CANGA Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP)
Length = 253
Score = 243 bits (619), Expect = 7e-64
Identities = 113/164 (68%), Positives = 134/164 (81%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLAC+C ID++ SKTTKIYPLPHM +VKDLVPD++ FY QY+ I+PYL++ + AD GK
Sbjct: 91 TLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQR-TDYPAD-GK 148
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
+V QS+ DR LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+ T
Sbjct: 149 EV-LQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWLIDSRDQAT 207
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
K R L N S YRCHTIMNCT+TCPKGLNPG +I +IK LA
Sbjct: 208 KARRTMLQNSMSLYRCHTIMNCTRTCPKGLNPGRSIAEIKKQLA 251
>sp|Q75CI4|DHSB_ASHGO Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP)
Length = 261
Score = 241 bits (614), Expect = 3e-63
Identities = 113/166 (68%), Positives = 132/166 (79%)
Frame = +3
Query: 12 RGTLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADI 191
R TLAC+C ID+ +K KIYPLPHM+VVKDLVPD++NFY QY+ I+PYL+K ++ AD
Sbjct: 97 RNTLACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQKASK-PAD- 154
Query: 192 GKKVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDE 371
+ + QS+ DR LDGLYECILCACCST+CPSYWWN ++YLGPAVLMQAYRWMVDSRD
Sbjct: 155 -GREHLQSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQAYRWMVDSRDG 213
Query: 372 FTKERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
R EQL N S YRCHTIMNCT+TCPKGLNPG AI +IK LA
Sbjct: 214 AGAGRREQLQNAMSVYRCHTIMNCTRTCPKGLNPGKAIAEIKKALA 259
>sp|Q92JJ8|DHSB_RICCN Succinate dehydrogenase iron-sulfur protein
Length = 261
Score = 235 bits (599), Expect = 1e-61
Identities = 112/165 (67%), Positives = 132/165 (80%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLACI I+ + S KIYPLPHM VVKDLVPDMS+FYAQY IEP+LK + ++ +
Sbjct: 97 TLACIKPIE-DISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSER 155
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
QS+KDR+ LDGLYECILCACCSTSCPSYWWNGDKYLGPA+L+QAYRW+ DSRD+ T
Sbjct: 156 ---LQSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNT 212
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLAK 512
ERLE L + + YRCHTIMNCTKTCPKGLNP AIG+IK ++A+
Sbjct: 213 GERLEALEDPFKLYRCHTIMNCTKTCPKGLNPAKAIGKIKSLIAE 257
>sp|P21911|DHSB_SCHPO Succinate dehydrogenase [ubiquinone] iron-sulfur protein,
mitochondrial precursor (IP)
Length = 252
Score = 234 bits (596), Expect = 3e-61
Identities = 108/164 (65%), Positives = 130/164 (79%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLACICNI K+ +K TKIYPLPH +VKDLVPD++ FY QY+ IEP+L+ N +
Sbjct: 92 TLACICNIKKD-NKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQNDNIPK----D 146
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
K YQS DR LDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW++DSRD+ T
Sbjct: 147 KEFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQAT 206
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIKVMLA 509
+RL+ + N S YRCHTIMNC +TCPKGLNPGLAI ++K ++A
Sbjct: 207 AKRLDVMQNSMSVYRCHTIMNCARTCPKGLNPGLAIAKVKALMA 250
>sp|P80480|DHSB_RECAM Succinate dehydrogenase [ubiquinone] iron-sulfur protein (IP)
Length = 239
Score = 234 bits (596), Expect = 3e-61
Identities = 110/160 (68%), Positives = 129/160 (80%)
Frame = +3
Query: 18 TLACICNIDKNTSKTTKIYPLPHMHVVKDLVPDMSNFYAQYRWIEPYLKKKNENEADIGK 197
TLACI +ID N K KIYPLPHMH++KDLVPD+SNFYAQY+ IEP++K E + D
Sbjct: 78 TLACIKSIDTN-KKEMKIYPLPHMHIIKDLVPDLSNFYAQYKSIEPWMKT-TEKKLD--- 132
Query: 198 KVNYQSVKDRDVLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMVDSRDEFT 377
K YQS DR+ LDGLYEC+LCACCSTSCPSYWWN DKYLGPAVL+QAYRW+VDSRD+ T
Sbjct: 133 KEFYQSRNDREKLDGLYECVLCACCSTSCPSYWWNSDKYLGPAVLLQAYRWIVDSRDQGT 192
Query: 378 KERLEQLNNGWSAYRCHTIMNCTKTCPKGLNPGLAIGQIK 497
+ERL+ L + + YRCHTI+NCTKTCPK LNP AI +IK
Sbjct: 193 RERLQYLEDPFKLYRCHTILNCTKTCPKHLNPAQAIAKIK 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,643,513
Number of Sequences: 369166
Number of extensions: 1899678
Number of successful extensions: 5800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5743
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)