Planaria EST Database


DrC_01185

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01185
         (268 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09087|ABDB_DROME  Homeobox protein abdominal-B (P3) (Inf...    83   2e-16
sp|P17482|HXB9_HUMAN  Homeobox protein Hox-B9 (Hox-2E) (Hox-...    78   6e-15
sp|P20615|HXB9_MOUSE  Homeobox protein Hox-B9 (Hox-2.5)            78   6e-15
sp|Q9IA16|HXD12_HETFR  Homeobox protein Hox-D12                    78   7e-15
sp|P09633|HXC9_MOUSE  Homeobox protein Hox-C9 (Hox-3.2)            77   1e-14
sp|P31274|HXC9_HUMAN  Homeobox protein Hox-C9 (Hox-3B)             77   1e-14
sp|Q9YGS6|HXC9A_BRARE  Homeobox protein Hox-C9a (Hox-C9)           77   1e-14
sp|Q28601|HXC9_SHEEP  Homeobox protein Hox-C9                      77   1e-14
sp|Q9PVQ9|HXC9_ORYLA  Homeobox protein Hox-C9                      77   1e-14
sp|P28357|HXD9_MOUSE  Homeobox protein Hox-D9 (Hox-4.4) (Hox...    77   1e-14
>sp|P09087|ABDB_DROME Homeobox protein abdominal-B (P3) (Infraabdominal 7) (IAB-7)
           (PH189)
          Length = 493

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 35/53 (66%), Positives = 46/53 (86%)
 Frame = +2

Query: 110 RKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           RKKRKPY+++QT+ LE EF  NAY+++QKRWE++  L L+ERQVK+WFQNRRM
Sbjct: 388 RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440
>sp|P17482|HXB9_HUMAN Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
          Length = 250

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 36/54 (66%), Positives = 44/54 (81%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           SRKKR PYT+YQT+ LE EF  N Y+TR +R E++  L+LSERQVK+WFQNRRM
Sbjct: 185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
>sp|P20615|HXB9_MOUSE Homeobox protein Hox-B9 (Hox-2.5)
          Length = 250

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 36/54 (66%), Positives = 44/54 (81%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           SRKKR PYT+YQT+ LE EF  N Y+TR +R E++  L+LSERQVK+WFQNRRM
Sbjct: 185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
>sp|Q9IA16|HXD12_HETFR Homeobox protein Hox-D12
          Length = 272

 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 35/57 (61%), Positives = 47/57 (82%)
 Frame = +2

Query: 98  EMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           ++RSR+KRKPYT+ Q   LE+EF  N +I RQKR E+S +L+LS++QVK+WFQNRRM
Sbjct: 201 QVRSRRKRKPYTKQQIAELENEFLANEFINRQKRKELSDRLNLSDQQVKIWFQNRRM 257
>sp|P09633|HXC9_MOUSE Homeobox protein Hox-C9 (Hox-3.2)
          Length = 260

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|P31274|HXC9_HUMAN Homeobox protein Hox-C9 (Hox-3B)
          Length = 260

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|Q9YGS6|HXC9A_BRARE Homeobox protein Hox-C9a (Hox-C9)
          Length = 260

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|Q28601|HXC9_SHEEP Homeobox protein Hox-C9
          Length = 96

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 28  TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 81
>sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox-C9
          Length = 262

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 194 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 247
>sp|P28357|HXD9_MOUSE Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2)
          Length = 339

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 45/54 (83%)
 Frame = +2

Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
           +RKKR PYT+YQT+ LE EF  N Y+TR +R+E++  L+L+ERQVK+WFQNRRM
Sbjct: 272 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 325
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,299,438
Number of Sequences: 369166
Number of extensions: 537848
Number of successful extensions: 2290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)