Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_J04
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09087|ABDB_DROME Homeobox protein abdominal-B (P3) (Inf... 83 2e-16
sp|P17482|HXB9_HUMAN Homeobox protein Hox-B9 (Hox-2E) (Hox-... 78 6e-15
sp|P20615|HXB9_MOUSE Homeobox protein Hox-B9 (Hox-2.5) 78 6e-15
sp|Q9IA16|HXD12_HETFR Homeobox protein Hox-D12 78 7e-15
sp|P09633|HXC9_MOUSE Homeobox protein Hox-C9 (Hox-3.2) 77 1e-14
sp|P31274|HXC9_HUMAN Homeobox protein Hox-C9 (Hox-3B) 77 1e-14
sp|Q9YGS6|HXC9A_BRARE Homeobox protein Hox-C9a (Hox-C9) 77 1e-14
sp|Q28601|HXC9_SHEEP Homeobox protein Hox-C9 77 1e-14
sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox-C9 77 1e-14
sp|P28357|HXD9_MOUSE Homeobox protein Hox-D9 (Hox-4.4) (Hox... 77 1e-14
>sp|P09087|ABDB_DROME Homeobox protein abdominal-B (P3) (Infraabdominal 7) (IAB-7)
(PH189)
Length = 493
Score = 83.2 bits (204), Expect = 2e-16
Identities = 35/53 (66%), Positives = 46/53 (86%)
Frame = +2
Query: 110 RKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
RKKRKPY+++QT+ LE EF NAY+++QKRWE++ L L+ERQVK+WFQNRRM
Sbjct: 388 RKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARNLQLTERQVKIWFQNRRM 440
>sp|P17482|HXB9_HUMAN Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5)
Length = 250
Score = 78.2 bits (191), Expect = 6e-15
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
SRKKR PYT+YQT+ LE EF N Y+TR +R E++ L+LSERQVK+WFQNRRM
Sbjct: 185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
>sp|P20615|HXB9_MOUSE Homeobox protein Hox-B9 (Hox-2.5)
Length = 250
Score = 78.2 bits (191), Expect = 6e-15
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
SRKKR PYT+YQT+ LE EF N Y+TR +R E++ L+LSERQVK+WFQNRRM
Sbjct: 185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRM 238
>sp|Q9IA16|HXD12_HETFR Homeobox protein Hox-D12
Length = 272
Score = 77.8 bits (190), Expect = 7e-15
Identities = 35/57 (61%), Positives = 47/57 (82%)
Frame = +2
Query: 98 EMRSRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
++RSR+KRKPYT+ Q LE+EF N +I RQKR E+S +L+LS++QVK+WFQNRRM
Sbjct: 201 QVRSRRKRKPYTKQQIAELENEFLANEFINRQKRKELSDRLNLSDQQVKIWFQNRRM 257
>sp|P09633|HXC9_MOUSE Homeobox protein Hox-C9 (Hox-3.2)
Length = 260
Score = 77.4 bits (189), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|P31274|HXC9_HUMAN Homeobox protein Hox-C9 (Hox-3B)
Length = 260
Score = 77.4 bits (189), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|Q9YGS6|HXC9A_BRARE Homeobox protein Hox-C9a (Hox-C9)
Length = 260
Score = 77.4 bits (189), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 192 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 245
>sp|Q28601|HXC9_SHEEP Homeobox protein Hox-C9
Length = 96
Score = 77.4 bits (189), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 28 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 81
>sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox-C9
Length = 262
Score = 77.4 bits (189), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 194 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRM 247
>sp|P28357|HXD9_MOUSE Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2)
Length = 339
Score = 77.0 bits (188), Expect = 1e-14
Identities = 34/54 (62%), Positives = 45/54 (83%)
Frame = +2
Query: 107 SRKKRKPYTRYQTMVLESEFTGNAYITRQKRWEISCKLHLSERQVKVWFQNRRM 268
+RKKR PYT+YQT+ LE EF N Y+TR +R+E++ L+L+ERQVK+WFQNRRM
Sbjct: 272 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRM 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,299,438
Number of Sequences: 369166
Number of extensions: 537848
Number of successful extensions: 2290
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)