Planaria EST Database


DrC_01178

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01178
         (327 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O55236|MCE1_MOUSE  mRNA capping enzyme (HCE) (MCE1) [Incl...    32   0.34 
sp|O60942|MCE1_HUMAN  mRNA capping enzyme (HCE) (HCAP1) [Inc...    32   0.45 
sp|Q17607|MCE1_CAEEL  mRNA capping enzyme [Includes: Polynuc...    31   0.76 
sp|P87000|ACU15_NEUCR  Transcriptional activator protein acu-15    30   2.2  
sp|P35194|YBA4_YEAST  Hypothetical 287.5 kDa protein in PDR3...    28   8.4  
>sp|O55236|MCE1_MOUSE mRNA capping enzyme (HCE) (MCE1) [Includes: Polynucleotide
           5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA
           guanylyltransferase (GTP--RNA guanylyltransferase)
           (GTase)]
          Length = 597

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 16  TLNEALGIFSKARPPGIYDVKYLQQLVKLF----QPSTPIIYPD 135
           ++  A+  F++ARPPGIY   YL++L + +    +   P + PD
Sbjct: 148 SIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPVLPD 191
>sp|O60942|MCE1_HUMAN mRNA capping enzyme (HCE) (HCAP1) [Includes: Polynucleotide
           5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA
           guanylyltransferase (GTP--RNA guanylyltransferase)
           (GTase)]
          Length = 597

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 16  TLNEALGIFSKARPPGIYDVKYLQQLVKLF----QPSTPIIYPD 135
           ++  A+  F++ARPPGIY   YL++L + +    +   P + PD
Sbjct: 148 SIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPD 191
>sp|Q17607|MCE1_CAEEL mRNA capping enzyme [Includes: Polynucleotide 5'-triphosphatase
           (mRNA 5'-triphosphatase) (TPase); mRNA
           guanylyltransferase (GTP--RNA guanylyltransferase)
           (GTase)]
          Length = 623

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 19  LNEALGIFSKARPPGIYDVKYLQQLVKLFQPS--TPIIYPDPPKW 147
           L+ A+G F++ R  GIY   Y+  L   + P+    I+ P+ P W
Sbjct: 159 LDAAIGEFAENRQKGIYKQDYIDDLFARYDPTEDDKILAPEKPDW 203
>sp|P87000|ACU15_NEUCR Transcriptional activator protein acu-15
          Length = 926

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 19  LNEALGIFSKARPPGIYDVKYLQQLVKLFQPSTPIIYPDPPK 144
           +N  + I +K   PG YD K +  ++   + S P   P PP+
Sbjct: 570 VNSVVKIVTKVNAPGSYDFKRIAGMLVTVEESLPQSLPTPPR 611
>sp|P35194|YBA4_YEAST Hypothetical 287.5 kDa protein in PDR3-HTA2 intergenic region
          Length = 2493

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 LLNYQPNLKNLMKCVKFVNQNTTFLLPEGKEN 289
           L  Y+ NLKNL+    F ++ TTFL   G ++
Sbjct: 881 LNKYRDNLKNLLDDTLFKDEITTFLTENGSQS 912
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,856,117
Number of Sequences: 369166
Number of extensions: 508112
Number of successful extensions: 1261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)