Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01178
(327 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O55236|MCE1_MOUSE mRNA capping enzyme (HCE) (MCE1) [Incl... 32 0.34
sp|O60942|MCE1_HUMAN mRNA capping enzyme (HCE) (HCAP1) [Inc... 32 0.45
sp|Q17607|MCE1_CAEEL mRNA capping enzyme [Includes: Polynuc... 31 0.76
sp|P87000|ACU15_NEUCR Transcriptional activator protein acu-15 30 2.2
sp|P35194|YBA4_YEAST Hypothetical 287.5 kDa protein in PDR3... 28 8.4
>sp|O55236|MCE1_MOUSE mRNA capping enzyme (HCE) (MCE1) [Includes: Polynucleotide
5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA
guanylyltransferase (GTP--RNA guanylyltransferase)
(GTase)]
Length = 597
Score = 32.3 bits (72), Expect = 0.34
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 16 TLNEALGIFSKARPPGIYDVKYLQQLVKLF----QPSTPIIYPD 135
++ A+ F++ARPPGIY YL++L + + + P + PD
Sbjct: 148 SIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPVLPD 191
>sp|O60942|MCE1_HUMAN mRNA capping enzyme (HCE) (HCAP1) [Includes: Polynucleotide
5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA
guanylyltransferase (GTP--RNA guanylyltransferase)
(GTase)]
Length = 597
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 16 TLNEALGIFSKARPPGIYDVKYLQQLVKLF----QPSTPIIYPD 135
++ A+ F++ARPPGIY YL++L + + + P + PD
Sbjct: 148 SIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPD 191
>sp|Q17607|MCE1_CAEEL mRNA capping enzyme [Includes: Polynucleotide 5'-triphosphatase
(mRNA 5'-triphosphatase) (TPase); mRNA
guanylyltransferase (GTP--RNA guanylyltransferase)
(GTase)]
Length = 623
Score = 31.2 bits (69), Expect = 0.76
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 19 LNEALGIFSKARPPGIYDVKYLQQLVKLFQPS--TPIIYPDPPKW 147
L+ A+G F++ R GIY Y+ L + P+ I+ P+ P W
Sbjct: 159 LDAAIGEFAENRQKGIYKQDYIDDLFARYDPTEDDKILAPEKPDW 203
>sp|P87000|ACU15_NEUCR Transcriptional activator protein acu-15
Length = 926
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 19 LNEALGIFSKARPPGIYDVKYLQQLVKLFQPSTPIIYPDPPK 144
+N + I +K PG YD K + ++ + S P P PP+
Sbjct: 570 VNSVVKIVTKVNAPGSYDFKRIAGMLVTVEESLPQSLPTPPR 611
>sp|P35194|YBA4_YEAST Hypothetical 287.5 kDa protein in PDR3-HTA2 intergenic region
Length = 2493
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 194 LLNYQPNLKNLMKCVKFVNQNTTFLLPEGKEN 289
L Y+ NLKNL+ F ++ TTFL G ++
Sbjct: 881 LNKYRDNLKNLLDDTLFKDEITTFLTENGSQS 912
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,856,117
Number of Sequences: 369166
Number of extensions: 508112
Number of successful extensions: 1261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)