Planaria EST Database


DrC_01171

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01171
         (896 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57740|NU107_HUMAN  Nuclear pore complex protein Nup107 (...   130   5e-30
sp|P52590|NU107_RAT  Nuclear pore complex protein Nup107 (Nu...   129   1e-29
sp|Q8BH74|NU107_MOUSE  Nuclear pore complex protein Nup107 (...   129   1e-29
sp|Q10331|NU107_SCHPO  Nucleoporin nup107 (Nuclear pore prot...    54   6e-07
sp|O51749|TGT_BORBU  Queuine tRNA-ribosyltransferase (tRNA-g...    33   1.1  
sp|P29978|Y1448_ANASP  Hypothetical protein alr1448                32   2.4  
sp|P26433|SL9A3_RAT  Sodium/hydrogen exchanger 3 (Na(+)/H(+)...    31   4.1  
sp|Q8Y570|CLPB_LISMO  Chaperone clpB                               31   4.1  
sp|Q71XF9|CLPB_LISMF  Chaperone clpB                               31   4.1  
sp|Q5ZMV2|SAS6_CHICK  Spindle assembly abnormal protein 6 ho...    31   5.4  
>sp|P57740|NU107_HUMAN Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
            nucleoporin)
          Length = 925

 Score =  130 bits (327), Expect = 5e-30
 Identities = 94/296 (31%), Positives = 152/296 (51%), Gaps = 4/296 (1%)
 Frame = +3

Query: 6    NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
            N YERAIYA   GNL+ L  V   W   +WA+F+V ++S+V+  ++T             
Sbjct: 421  NRYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIQTSV----------- 469

Query: 186  GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
                      A L   E+  +P E   + ++W LE++F+E+             R  + N
Sbjct: 470  ----------ATLDETEE--LpreY--LGANWTLEKVFEELQATDKK-------RVLEEN 508

Query: 366  QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
            Q         + IVQ+F+ILGDI+GL+ + +  +S   +++N    +++RF+ HLI+F  
Sbjct: 509  QEH-------YHIVQKFLILGDIDGLMDEFSKWLS---KSRNNLPGHLLRFMTHLILFFR 558

Query: 546  STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
            +     K EV  +VL+ YI+ LI +K  + +AFY   L  DL +  Y   L  VT F++R
Sbjct: 559  TLGLQTKEEVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQDLAVAQYALFLESVTEFEQR 618

Query: 726  AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
              C+E  +E  L +  IT+ +V+ IR  +N EF    ++P + T T  +DR K D+
Sbjct: 619  HHCLELAKEADLDVATITKTVVENIRKKDNGEFSHHDLAPALDTGTTEEDRLKIDV 674
>sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
            nucleoporin) (p105)
          Length = 926

 Score =  129 bits (324), Expect = 1e-29
 Identities = 91/296 (30%), Positives = 153/296 (51%), Gaps = 4/296 (1%)
 Frame = +3

Query: 6    NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
            N YERAIYA   GNL+ L  V   W   +WA+F+V ++S+V+  ++T             
Sbjct: 422  NKYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIRT------------- 468

Query: 186  GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
                      +V+   E   +P E   + ++W LE++F+E+             R  + N
Sbjct: 469  ----------SVMTLDETEELpreY--MEANWTLEKVFEELQATDKK-------RVLEEN 509

Query: 366  QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
            Q         + +VQ+F+ILGDI+GL+ + +  +S   ++++    +++RF+ HLI+F  
Sbjct: 510  QEH-------YHVVQKFLILGDIDGLMDEFSKWLS---KSRSSLPGHLLRFMTHLILFFR 559

Query: 546  STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
            +     K EV  +VL+ YI+ LI +K  + +AFY   L  DL +  Y   L GVT  ++R
Sbjct: 560  TLGLQTKEEVSIEVLKTYIQLLINEKHTNLIAFYTCHLPQDLAVAQYALFLEGVTECEQR 619

Query: 726  AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
             +C+E  +E  L +  IT+ +V+ IR  +N EF    ++P + T T  +DR K D+
Sbjct: 620  HQCLELAKEADLDVATITKTVVENIRKKDNGEFSHHDLAPSLDTATTEEDRLKIDV 675
>sp|Q8BH74|NU107_MOUSE Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
            nucleoporin)
          Length = 926

 Score =  129 bits (323), Expect = 1e-29
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 4/296 (1%)
 Frame = +3

Query: 6    NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
            N YERAIYA   GNL+ L  V   W   +WA+F+V ++S+V+  ++T             
Sbjct: 422  NKYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIRT------------- 468

Query: 186  GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
                      +V+   +   +P E   + ++W LE++F+E+             R  + N
Sbjct: 469  ----------SVMTQDDSEELpreY--MEANWTLEKVFEELQATDKK-------RVLEEN 509

Query: 366  QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
            Q         + IVQ+F+ILGD++GL+ + +  +S   ++ +    +++RF+ HLI+F+ 
Sbjct: 510  QEH-------YHIVQKFLILGDVDGLMDEFSKWLS---KSGSSLPGHLLRFMTHLILFLR 559

Query: 546  STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
            +     K EV  +VL+ YI+ LI +K    +AFY   L  DL +  Y   L GVT F++R
Sbjct: 560  TLGLQTKEEVSIEVLKTYIQLLISEKHTSLIAFYTCHLPQDLAVAQYALFLEGVTEFEQR 619

Query: 726  AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
             +C+E  +E  L +  IT+ +V+ I   +N EF    ++P + T T  +DR K D+
Sbjct: 620  HQCLELAKEADLDVATITKTVVENICKKDNGEFSHHDLAPSLDTGTTEEDRLKIDV 675
>sp|Q10331|NU107_SCHPO Nucleoporin nup107 (Nuclear pore protein nup107)
          Length = 794

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 60/283 (21%), Positives = 117/283 (41%), Gaps = 7/283 (2%)
 Frame = +3

Query: 3    LNLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSL 182
            ++ YERA+Y   CG+L  +  V   W   +WA    Y  S+  + L  + ++    T++ 
Sbjct: 305  IDSYERALYGALCGDLNSVLDVCTTWEDAMWA----YYNSMTQYNLDVYLSSKAPQTETQ 360

Query: 183  FGDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQN 362
                D  +            + P  I +  S+  +  I +E S    H  I +       
Sbjct: 361  LPPVDSGLG-----------LTPELIFNSLSNSSIASIQEEAS----HPLIKL------- 398

Query: 363  NQSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFI 542
               + +    I EI+            IQ  A    + PE+ ++    ++R L H+I+F+
Sbjct: 399  --QTHIICNKISEILSS--------AHIQLEAIRTGNAPESGDLVTPPLLRILTHIILFL 448

Query: 543  YSTHENLKIEVY--HDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNF 716
              +   L ++ Y    +++ YI+ L   K ++ V  YI  LS  +Q + Y + L+ V   
Sbjct: 449  KIS--GLAVDEYTSDSIIQAYIELLASAKKVNLVPLYIQYLSNQVQYEAYSRFLILVDEE 506

Query: 717  KERAKCIEDGREYYLPI-----IEITQHLVQTIRISENEFETI 830
              R++ ++  ++Y L I     + +     + + +S  E  T+
Sbjct: 507  SARSEQLQLAKKYSLDINHAALLAVEYVYDEVVSVSPEEVHTV 549
>sp|O51749|TGT_BORBU Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
           (Guanine insertion enzyme)
          Length = 375

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
 Frame = +3

Query: 27  YATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLFGDD---D 197
           + T  G  RV S  +     L   HFK +I+    HY   FT+ G+F  Q +FG D    
Sbjct: 87  FLTDSGGFRVFSFSDLRKIDLKGVHFKSHIDGSY-HY---FTSEGIFAMQEIFGSDIIMP 142

Query: 198 FDV-SRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNNQSS 374
            D+ S + +     D    +   +IT++W         + K  ++  G+L    Q N   
Sbjct: 143 LDICSSYGI-----DYNEANLYTNITTNWASSTFKSSKNRKEGYN--GLLFLITQGNFFK 195

Query: 375 KLYFQSIFEIVQ 410
            L  +SI +I++
Sbjct: 196 DLRKRSINDILE 207
>sp|P29978|Y1448_ANASP Hypothetical protein alr1448
          Length = 384

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
 Frame = +3

Query: 519 LAHLIIFIYSTHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCL 698
           LA+LI +I +   ++KI V    +  Y+ C + ++ L N AF  ++L+ +++ +   K  
Sbjct: 163 LANLISYIRTKKPDIKIYVIAHSMGSYLVCHMLEQ-LVNQAFEPTELNEEIKNRLKRKDR 221

Query: 699 MGVTNF--------------KERAKCIEDGREYYLPIIEITQHLVQTIRISENEFE 824
            G   F              +E  KC   G EY  P     +HLVQ   +  + ++
Sbjct: 222 GGENTFFVDRYFMLAPDVERREVTKCDLGGSEYTGPFYSGLEHLVQESHVFYSRYD 277
>sp|P26433|SL9A3_RAT Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3) (NHE-3)
           (Solute carrier family 9 member 3)
          Length = 831

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 24/107 (22%), Positives = 48/107 (44%)
 Frame = +3

Query: 252 SEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNNQSSKLYFQSIFEIVQQFIILGD 431
           S +D +  +W    +   +   S +  IGV+ +T   N+   +  ++I ++V  +     
Sbjct: 354 SAVDPVIWTWNTAFVLLTLVFISVYRAIGVVLQTWILNRYRMVQLETIDQVVMSY----- 408

Query: 432 IEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIYSTHENLKIE 572
             GL   VAY +  L + K V +KN+      +++F     + L I+
Sbjct: 409 -GGLRGAVAYALVVLLDEKKVKEKNLFVSTTLIVVFFTVIFQGLTIK 454
>sp|Q8Y570|CLPB_LISMO Chaperone clpB
          Length = 866

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
 Frame = +3

Query: 231 IEDRMMPSEIDDITSS-WQLEQIFDEISLKSNHDP-----IGVLHRTNQNNQSSKLYFQS 392
           +E   MPSE+D++T    QLE   +E +LK   DP     + +L R   + +      +S
Sbjct: 405 VEIDSMPSELDEVTRKVMQLE--IEEAALKEEKDPASERRLEILQRELADYKEEANQMKS 462

Query: 393 IFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAH 527
            +E  +  I    I  + +Q+ ++   L EA+N  D N    L H
Sbjct: 463 KWESEKNEI--SKIREVREQIDHLRHELEEAENNYDLNKAAELRH 505
>sp|Q71XF9|CLPB_LISMF Chaperone clpB
          Length = 866

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
 Frame = +3

Query: 231 IEDRMMPSEIDDITSS-WQLEQIFDEISLKSNHDP-----IGVLHRTNQNNQSSKLYFQS 392
           +E   MPSE+D++T    QLE   +E +LK   DP     + +L R   + +      +S
Sbjct: 405 VEIDSMPSELDEVTRKVMQLE--IEEAALKEEKDPASERRLEILQRELADYKEEANQMKS 462

Query: 393 IFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAH 527
            +E  +  I    I  + +Q+ ++   L EA+N  D N    L H
Sbjct: 463 KWESEKNEI--SKIREVREQIDHLRHELEEAENNYDLNKAAELRH 505
>sp|Q5ZMV2|SAS6_CHICK Spindle assembly abnormal protein 6 homolog
          Length = 640

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = +3

Query: 387 QSIFEIVQQFIILG--DIEGLIQQVAY---IISHLPEAKNVADKNIIRFLAHLII-FIYS 548
           Q   +++QQ I     DI   + Q+ Y   ++ H P + NV + N  + L HL + F+  
Sbjct: 86  QKFIDLLQQCIQEQNKDIPRFLLQLVYSGSVLDHTPVSLNVVETNPFKHLTHLSLKFLPG 145

Query: 549 THENLKIEVYHDVLEEYIKCLIEDK 623
               +K       L   +KCL EDK
Sbjct: 146 NDAEIK-----KFLARCLKCLKEDK 165
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,086,667
Number of Sequences: 369166
Number of extensions: 2190591
Number of successful extensions: 5356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5350
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)