Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_F11
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57740|NU107_HUMAN Nuclear pore complex protein Nup107 (... 130 5e-30
sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nu... 129 1e-29
sp|Q8BH74|NU107_MOUSE Nuclear pore complex protein Nup107 (... 129 1e-29
sp|Q10331|NU107_SCHPO Nucleoporin nup107 (Nuclear pore prot... 54 6e-07
sp|O51749|TGT_BORBU Queuine tRNA-ribosyltransferase (tRNA-g... 33 1.1
sp|P29978|Y1448_ANASP Hypothetical protein alr1448 32 2.4
sp|P26433|SL9A3_RAT Sodium/hydrogen exchanger 3 (Na(+)/H(+)... 31 4.1
sp|Q8Y570|CLPB_LISMO Chaperone clpB 31 4.1
sp|Q71XF9|CLPB_LISMF Chaperone clpB 31 4.1
sp|Q5ZMV2|SAS6_CHICK Spindle assembly abnormal protein 6 ho... 31 5.4
>sp|P57740|NU107_HUMAN Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin)
Length = 925
Score = 130 bits (327), Expect = 5e-30
Identities = 94/296 (31%), Positives = 152/296 (51%), Gaps = 4/296 (1%)
Frame = +3
Query: 6 NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
N YERAIYA GNL+ L V W +WA+F+V ++S+V+ ++T
Sbjct: 421 NRYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIQTSV----------- 469
Query: 186 GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
A L E+ +P E + ++W LE++F+E+ R + N
Sbjct: 470 ----------ATLDETEE--LpreY--LGANWTLEKVFEELQATDKK-------RVLEEN 508
Query: 366 QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
Q + IVQ+F+ILGDI+GL+ + + +S +++N +++RF+ HLI+F
Sbjct: 509 QEH-------YHIVQKFLILGDIDGLMDEFSKWLS---KSRNNLPGHLLRFMTHLILFFR 558
Query: 546 STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
+ K EV +VL+ YI+ LI +K + +AFY L DL + Y L VT F++R
Sbjct: 559 TLGLQTKEEVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQDLAVAQYALFLESVTEFEQR 618
Query: 726 AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
C+E +E L + IT+ +V+ IR +N EF ++P + T T +DR K D+
Sbjct: 619 HHCLELAKEADLDVATITKTVVENIRKKDNGEFSHHDLAPALDTGTTEEDRLKIDV 674
>sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105)
Length = 926
Score = 129 bits (324), Expect = 1e-29
Identities = 91/296 (30%), Positives = 153/296 (51%), Gaps = 4/296 (1%)
Frame = +3
Query: 6 NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
N YERAIYA GNL+ L V W +WA+F+V ++S+V+ ++T
Sbjct: 422 NKYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIRT------------- 468
Query: 186 GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
+V+ E +P E + ++W LE++F+E+ R + N
Sbjct: 469 ----------SVMTLDETEELpreY--MEANWTLEKVFEELQATDKK-------RVLEEN 509
Query: 366 QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
Q + +VQ+F+ILGDI+GL+ + + +S ++++ +++RF+ HLI+F
Sbjct: 510 QEH-------YHVVQKFLILGDIDGLMDEFSKWLS---KSRSSLPGHLLRFMTHLILFFR 559
Query: 546 STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
+ K EV +VL+ YI+ LI +K + +AFY L DL + Y L GVT ++R
Sbjct: 560 TLGLQTKEEVSIEVLKTYIQLLINEKHTNLIAFYTCHLPQDLAVAQYALFLEGVTECEQR 619
Query: 726 AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
+C+E +E L + IT+ +V+ IR +N EF ++P + T T +DR K D+
Sbjct: 620 HQCLELAKEADLDVATITKTVVENIRKKDNGEFSHHDLAPSLDTATTEEDRLKIDV 675
>sp|Q8BH74|NU107_MOUSE Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin)
Length = 926
Score = 129 bits (323), Expect = 1e-29
Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 4/296 (1%)
Frame = +3
Query: 6 NLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLF 185
N YERAIYA GNL+ L V W +WA+F+V ++S+V+ ++T
Sbjct: 422 NKYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIRT------------- 468
Query: 186 GDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNN 365
+V+ + +P E + ++W LE++F+E+ R + N
Sbjct: 469 ----------SVMTQDDSEELpreY--MEANWTLEKVFEELQATDKK-------RVLEEN 509
Query: 366 QSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIY 545
Q + IVQ+F+ILGD++GL+ + + +S ++ + +++RF+ HLI+F+
Sbjct: 510 QEH-------YHIVQKFLILGDVDGLMDEFSKWLS---KSGSSLPGHLLRFMTHLILFLR 559
Query: 546 STHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNFKER 725
+ K EV +VL+ YI+ LI +K +AFY L DL + Y L GVT F++R
Sbjct: 560 TLGLQTKEEVSIEVLKTYIQLLISEKHTSLIAFYTCHLPQDLAVAQYALFLEGVTEFEQR 619
Query: 726 AKCIEDGREYYLPIIEITQHLVQTIRISEN-EF--ETISPII-TDTNFDDRDKFDM 881
+C+E +E L + IT+ +V+ I +N EF ++P + T T +DR K D+
Sbjct: 620 HQCLELAKEADLDVATITKTVVENICKKDNGEFSHHDLAPSLDTGTTEEDRLKIDV 675
>sp|Q10331|NU107_SCHPO Nucleoporin nup107 (Nuclear pore protein nup107)
Length = 794
Score = 53.9 bits (128), Expect = 6e-07
Identities = 60/283 (21%), Positives = 117/283 (41%), Gaps = 7/283 (2%)
Frame = +3
Query: 3 LNLYERAIYATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSL 182
++ YERA+Y CG+L + V W +WA Y S+ + L + ++ T++
Sbjct: 305 IDSYERALYGALCGDLNSVLDVCTTWEDAMWA----YYNSMTQYNLDVYLSSKAPQTETQ 360
Query: 183 FGDDDFDVSRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQN 362
D + + P I + S+ + I +E S H I +
Sbjct: 361 LPPVDSGLG-----------LTPELIFNSLSNSSIASIQEEAS----HPLIKL------- 398
Query: 363 NQSSKLYFQSIFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFI 542
+ + I EI+ IQ A + PE+ ++ ++R L H+I+F+
Sbjct: 399 --QTHIICNKISEILSS--------AHIQLEAIRTGNAPESGDLVTPPLLRILTHIILFL 448
Query: 543 YSTHENLKIEVY--HDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCLMGVTNF 716
+ L ++ Y +++ YI+ L K ++ V YI LS +Q + Y + L+ V
Sbjct: 449 KIS--GLAVDEYTSDSIIQAYIELLASAKKVNLVPLYIQYLSNQVQYEAYSRFLILVDEE 506
Query: 717 KERAKCIEDGREYYLPI-----IEITQHLVQTIRISENEFETI 830
R++ ++ ++Y L I + + + + +S E T+
Sbjct: 507 SARSEQLQLAKKYSLDINHAALLAVEYVYDEVVSVSPEEVHTV 549
>sp|O51749|TGT_BORBU Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 375
Score = 33.1 bits (74), Expect = 1.1
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Frame = +3
Query: 27 YATFCGNLRVLSMVEKDWNGLLWAHFKVYIESVVDHYLKTFTNNGVFNTQSLFGDD---D 197
+ T G RV S + L HFK +I+ HY FT+ G+F Q +FG D
Sbjct: 87 FLTDSGGFRVFSFSDLRKIDLKGVHFKSHIDGSY-HY---FTSEGIFAMQEIFGSDIIMP 142
Query: 198 FDV-SRFAVLRNIEDRMMPSEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNNQSS 374
D+ S + + D + +IT++W + K ++ G+L Q N
Sbjct: 143 LDICSSYGI-----DYNEANLYTNITTNWASSTFKSSKNRKEGYN--GLLFLITQGNFFK 195
Query: 375 KLYFQSIFEIVQ 410
L +SI +I++
Sbjct: 196 DLRKRSINDILE 207
>sp|P29978|Y1448_ANASP Hypothetical protein alr1448
Length = 384
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Frame = +3
Query: 519 LAHLIIFIYSTHENLKIEVYHDVLEEYIKCLIEDKCLDNVAFYISKLSTDLQIKWYCKCL 698
LA+LI +I + ++KI V + Y+ C + ++ L N AF ++L+ +++ + K
Sbjct: 163 LANLISYIRTKKPDIKIYVIAHSMGSYLVCHMLEQ-LVNQAFEPTELNEEIKNRLKRKDR 221
Query: 699 MGVTNF--------------KERAKCIEDGREYYLPIIEITQHLVQTIRISENEFE 824
G F +E KC G EY P +HLVQ + + ++
Sbjct: 222 GGENTFFVDRYFMLAPDVERREVTKCDLGGSEYTGPFYSGLEHLVQESHVFYSRYD 277
>sp|P26433|SL9A3_RAT Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3) (NHE-3)
(Solute carrier family 9 member 3)
Length = 831
Score = 31.2 bits (69), Expect = 4.1
Identities = 24/107 (22%), Positives = 48/107 (44%)
Frame = +3
Query: 252 SEIDDITSSWQLEQIFDEISLKSNHDPIGVLHRTNQNNQSSKLYFQSIFEIVQQFIILGD 431
S +D + +W + + S + IGV+ +T N+ + ++I ++V +
Sbjct: 354 SAVDPVIWTWNTAFVLLTLVFISVYRAIGVVLQTWILNRYRMVQLETIDQVVMSY----- 408
Query: 432 IEGLIQQVAYIISHLPEAKNVADKNIIRFLAHLIIFIYSTHENLKIE 572
GL VAY + L + K V +KN+ +++F + L I+
Sbjct: 409 -GGLRGAVAYALVVLLDEKKVKEKNLFVSTTLIVVFFTVIFQGLTIK 454
>sp|Q8Y570|CLPB_LISMO Chaperone clpB
Length = 866
Score = 31.2 bits (69), Expect = 4.1
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +3
Query: 231 IEDRMMPSEIDDITSS-WQLEQIFDEISLKSNHDP-----IGVLHRTNQNNQSSKLYFQS 392
+E MPSE+D++T QLE +E +LK DP + +L R + + +S
Sbjct: 405 VEIDSMPSELDEVTRKVMQLE--IEEAALKEEKDPASERRLEILQRELADYKEEANQMKS 462
Query: 393 IFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAH 527
+E + I I + +Q+ ++ L EA+N D N L H
Sbjct: 463 KWESEKNEI--SKIREVREQIDHLRHELEEAENNYDLNKAAELRH 505
>sp|Q71XF9|CLPB_LISMF Chaperone clpB
Length = 866
Score = 31.2 bits (69), Expect = 4.1
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +3
Query: 231 IEDRMMPSEIDDITSS-WQLEQIFDEISLKSNHDP-----IGVLHRTNQNNQSSKLYFQS 392
+E MPSE+D++T QLE +E +LK DP + +L R + + +S
Sbjct: 405 VEIDSMPSELDEVTRKVMQLE--IEEAALKEEKDPASERRLEILQRELADYKEEANQMKS 462
Query: 393 IFEIVQQFIILGDIEGLIQQVAYIISHLPEAKNVADKNIIRFLAH 527
+E + I I + +Q+ ++ L EA+N D N L H
Sbjct: 463 KWESEKNEI--SKIREVREQIDHLRHELEEAENNYDLNKAAELRH 505
>sp|Q5ZMV2|SAS6_CHICK Spindle assembly abnormal protein 6 homolog
Length = 640
Score = 30.8 bits (68), Expect = 5.4
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = +3
Query: 387 QSIFEIVQQFIILG--DIEGLIQQVAY---IISHLPEAKNVADKNIIRFLAHLII-FIYS 548
Q +++QQ I DI + Q+ Y ++ H P + NV + N + L HL + F+
Sbjct: 86 QKFIDLLQQCIQEQNKDIPRFLLQLVYSGSVLDHTPVSLNVVETNPFKHLTHLSLKFLPG 145
Query: 549 THENLKIEVYHDVLEEYIKCLIEDK 623
+K L +KCL EDK
Sbjct: 146 NDAEIK-----KFLARCLKCLKEDK 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,086,667
Number of Sequences: 369166
Number of extensions: 2190591
Number of successful extensions: 5356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5350
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)