Planaria EST Database


DrC_01162

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01162
         (858 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K9B9|SYL_BUCAP  Leucyl-tRNA synthetase (Leucine--tRNA l...    37   0.092
sp|Q7VLK4|SSPA_HAEDU  Stringent starvation protein A homolog       32   3.0  
sp|P59057|SYFB_BUCAP  Phenylalanyl-tRNA synthetase beta chai...    31   3.9  
sp|O70167|P3C2G_MOUSE  Phosphatidylinositol-4-phosphate 3-ki...    31   5.0  
sp|Q7V0W1|SYC_PROMP  Cysteinyl-tRNA synthetase (Cysteine--tR...    30   8.6  
sp|O15078|CE29_HUMAN  Centrosomal protein Cep290                   30   8.6  
sp|Q64654|CP51A_RAT  Cytochrome P450 51A1 (CYPLI) (P450LI) (...    30   8.6  
sp|P59523|UPPP_BUCBP  Undecaprenyl-diphosphatase (Undecapren...    30   8.6  
>sp|Q8K9B9|SYL_BUCAP Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
          Length = 861

 Score = 36.6 bits (83), Expect = 0.092
 Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 2/205 (0%)
 Frame = -3

Query: 658  IQKKLIGKEQSMNILTQKAKEQMFFLHNERHFSVDDLLENFPSTRKSCEYVVTRPLPILS 479
            I+ K I K+ + +IL +K K+    LH       DD+       RKS    ++  + +++
Sbjct: 682  IEVKKINKKVNFDILNKKQKKMYCLLHKTIIKVSDDI-----GRRKSFNTAISSIMELVN 736

Query: 478  LVELIRFNERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKS 299
             + + +        +I+   +SI   L  +           + L QY N N   +Y    
Sbjct: 737  ELSIFKIENEEDKSIIKESLMSIIKMLYPFTPHF------CFRLWQYLNKNCCIDYETWP 790

Query: 298  LLQLHDENEAKRIPGEMETLYNFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLYFKPE 119
                    E K +  +  TL            +  + KK   +E +NH  +  +L +   
Sbjct: 791  TF------EKKILSSDKNTLI-----------IQINGKKQCAIEVKNHLNKEEILSYIEN 833

Query: 118  SDIIRERLNTKKIIK--FIPKQLPN 50
              II++++   KIIK  +IP+++ N
Sbjct: 834  QSIIQKKIKNLKIIKIIYIPQKVIN 858
>sp|Q7VLK4|SSPA_HAEDU Stringent starvation protein A homolog
          Length = 214

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
 Frame = -3

Query: 547 LENFPSTRKSCEYVVTRP---LPILSLVELIRFNERIINRLIQVKS-----------LSI 410
           LEN      S +++   P   +P L   +L+ FN RII   +  +            L  
Sbjct: 38  LENINPNTISEDFLELNPYANIPTLVDRDLVLFNSRIIMEYLDERFPHPPLMPVYPVLRG 97

Query: 409 KNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLHDE 278
           K++L  +      +EQ+ YSLI   N N + +   K+L QL +E
Sbjct: 98  KSRLTMHR-----IEQDWYSLIDIVNKNPESKEAKKALSQLREE 136
>sp|P59057|SYFB_BUCAP Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
           beta chain) (PheRS)
          Length = 798

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
 Frame = -3

Query: 415 SIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLHDENEAKRIPGEMETLY 236
           S++ K+D Y+     ++ ++ SL++   G +KFE  ++++L LH E  AK     ++  Y
Sbjct: 610 SVRRKVDFYD-----LKGDLESLLEVICGLNKFEIRHQNILGLHPEQSAKIY---LDNKY 661

Query: 235 NFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLY-----FKPESDIIRERLNTKKIIKF 71
               +G   K  P  EKK L L       E  L Y     F    +I +   + + I   
Sbjct: 662 ----IGSLGKIHPKIEKK-LNLYNSTFLFELSLNYISKLKFYNTEEISKYPTSRRDIAIL 716

Query: 70  IPKQLP 53
           + K +P
Sbjct: 717 VSKDIP 722
>sp|O70167|P3C2G_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
           gamma polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
           (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
          Length = 1506

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
 Frame = -3

Query: 457 NERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLH-- 284
           N  + + + ++  L     L   E  L +     +  + ++ G+ K    NKS++QLH  
Sbjct: 308 NYLVKDLIAEILLLCANEPLSPKEYLLSVCGSEEFLQMDHSLGSHKIFQKNKSVIQLHLQ 367

Query: 283 ----------DENEAKRIPGEMETLYNFTVLGK-SFKCLPSSEKKPLILEKQNHQLETLL 137
                      ++E    P  +  L  FT + K S +CL +      +++K N  +E LL
Sbjct: 368 KNRDTPGKLSRKSEDDHSPFHLNQLLEFTHIWKISRQCLST------VMKKYNLHVEHLL 421

Query: 136 LYFKPESDIIRERLNT 89
              KP+ D+  + L++
Sbjct: 422 ---KPQKDMEEKHLSS 434
>sp|Q7V0W1|SYC_PROMP Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
          Length = 492

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = -3

Query: 370 VEQNMYSLIQYANGNDKFEYPNKSLLQLHDENEAKRIPGEMETLYNFTVLGKSFKCLPSS 191
           VE+    +I Y     K ++ N     L+       I    + L NF    +  K L  +
Sbjct: 348 VEETYKDMINYEISQKKIKFTNALNNDLNTAGAIAIIYELAKPLKNFINQFQRIKNLEIN 407

Query: 190 EKKPLILEKQNHQLETL--LLYFKPESDIIRERLNTKKIIKFIPKQLPNIANVDYSNLFK 17
             +   L +    LE L  +L  K E  II  R+N  +I+  I K+L      DY+   K
Sbjct: 408 TNEKFHLRETFKTLEELTDVLGLKKEEIIIDNRINEDQILSLINKRLGAKKEKDYAEADK 467

Query: 16  YK 11
            +
Sbjct: 468 IR 469
>sp|O15078|CE29_HUMAN Centrosomal protein Cep290
          Length = 1539

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
 Frame = -3

Query: 655  QKKLIGKEQSMNILTQKAKEQMFFLHNERHFSVDDLLENFPSTRKSCEYVVTRPLPILSL 476
            Q+ L    +    + +K +E +  LH+      D  L  F  T  + + +   P P+ + 
Sbjct: 620  QRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQT--AWDLMKQSPTPVPTN 677

Query: 475  VELIRFNERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPN-KS 299
               IR  E  + + +  +  S+ + L + ++    V Q++    +      K E+ N K 
Sbjct: 678  KHFIRLAE--MEQTVAEQDDSLSSLLVKLKK----VSQDLERQREITELKVK-EFENIKL 730

Query: 298  LLQLHDENEAKRIPGEMETL-YNFTVLGKSFKCLPS 194
             LQ + E+E K++  E+E L Y      K  +CL S
Sbjct: 731  QLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKS 766
>sp|Q64654|CP51A_RAT Cytochrome P450 51A1 (CYPLI) (P450LI) (Sterol 14-alpha demethylase)
           (Lanosterol 14-alpha demethylase) (LDM) (P450-14DM)
          Length = 503

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -3

Query: 241 LYNFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLYFKPESDIIRERLNTKKIIKFIPK 62
           +++FT++GK+F  L  S+   L+   +N  L    +Y          RL T    K +  
Sbjct: 95  VFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEEVY---------GRLTTPVFGKGVAY 145

Query: 61  QLPNIANVDYSNLFKYKIN 5
            +PN   ++   + K  +N
Sbjct: 146 DVPNAVFLEQKKILKSGLN 164
>sp|P59523|UPPP_BUCBP Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
           (Bacitracin resistance protein)
          Length = 268

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 390 MNNFYGL-LNKICIL*FNMQMVMINSNIPINHCCNYMTKMKLREFLV 253
           +NNFY + +N I +L        I SNI I  C N M    L  F++
Sbjct: 207 INNFYDISINNIPMLFSGFLSAFITSNIVIKRCLNTMKNCSLIPFII 253
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,376,588
Number of Sequences: 369166
Number of extensions: 1462422
Number of successful extensions: 4087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)