Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D14
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K9B9|SYL_BUCAP Leucyl-tRNA synthetase (Leucine--tRNA l... 37 0.092
sp|Q7VLK4|SSPA_HAEDU Stringent starvation protein A homolog 32 3.0
sp|P59057|SYFB_BUCAP Phenylalanyl-tRNA synthetase beta chai... 31 3.9
sp|O70167|P3C2G_MOUSE Phosphatidylinositol-4-phosphate 3-ki... 31 5.0
sp|Q7V0W1|SYC_PROMP Cysteinyl-tRNA synthetase (Cysteine--tR... 30 8.6
sp|O15078|CE29_HUMAN Centrosomal protein Cep290 30 8.6
sp|Q64654|CP51A_RAT Cytochrome P450 51A1 (CYPLI) (P450LI) (... 30 8.6
sp|P59523|UPPP_BUCBP Undecaprenyl-diphosphatase (Undecapren... 30 8.6
>sp|Q8K9B9|SYL_BUCAP Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 861
Score = 36.6 bits (83), Expect = 0.092
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 2/205 (0%)
Frame = -3
Query: 658 IQKKLIGKEQSMNILTQKAKEQMFFLHNERHFSVDDLLENFPSTRKSCEYVVTRPLPILS 479
I+ K I K+ + +IL +K K+ LH DD+ RKS ++ + +++
Sbjct: 682 IEVKKINKKVNFDILNKKQKKMYCLLHKTIIKVSDDI-----GRRKSFNTAISSIMELVN 736
Query: 478 LVELIRFNERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKS 299
+ + + +I+ +SI L + + L QY N N +Y
Sbjct: 737 ELSIFKIENEEDKSIIKESLMSIIKMLYPFTPHF------CFRLWQYLNKNCCIDYETWP 790
Query: 298 LLQLHDENEAKRIPGEMETLYNFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLYFKPE 119
E K + + TL + + KK +E +NH + +L +
Sbjct: 791 TF------EKKILSSDKNTLI-----------IQINGKKQCAIEVKNHLNKEEILSYIEN 833
Query: 118 SDIIRERLNTKKIIK--FIPKQLPN 50
II++++ KIIK +IP+++ N
Sbjct: 834 QSIIQKKIKNLKIIKIIYIPQKVIN 858
>sp|Q7VLK4|SSPA_HAEDU Stringent starvation protein A homolog
Length = 214
Score = 31.6 bits (70), Expect = 3.0
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 14/104 (13%)
Frame = -3
Query: 547 LENFPSTRKSCEYVVTRP---LPILSLVELIRFNERIINRLIQVKS-----------LSI 410
LEN S +++ P +P L +L+ FN RII + + L
Sbjct: 38 LENINPNTISEDFLELNPYANIPTLVDRDLVLFNSRIIMEYLDERFPHPPLMPVYPVLRG 97
Query: 409 KNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLHDE 278
K++L + +EQ+ YSLI N N + + K+L QL +E
Sbjct: 98 KSRLTMHR-----IEQDWYSLIDIVNKNPESKEAKKALSQLREE 136
>sp|P59057|SYFB_BUCAP Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 798
Score = 31.2 bits (69), Expect = 3.9
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Frame = -3
Query: 415 SIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLHDENEAKRIPGEMETLY 236
S++ K+D Y+ ++ ++ SL++ G +KFE ++++L LH E AK ++ Y
Sbjct: 610 SVRRKVDFYD-----LKGDLESLLEVICGLNKFEIRHQNILGLHPEQSAKIY---LDNKY 661
Query: 235 NFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLY-----FKPESDIIRERLNTKKIIKF 71
+G K P EKK L L E L Y F +I + + + I
Sbjct: 662 ----IGSLGKIHPKIEKK-LNLYNSTFLFELSLNYISKLKFYNTEEISKYPTSRRDIAIL 716
Query: 70 IPKQLP 53
+ K +P
Sbjct: 717 VSKDIP 722
>sp|O70167|P3C2G_MOUSE Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
gamma polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
(PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
Length = 1506
Score = 30.8 bits (68), Expect = 5.0
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Frame = -3
Query: 457 NERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPNKSLLQLH-- 284
N + + + ++ L L E L + + + ++ G+ K NKS++QLH
Sbjct: 308 NYLVKDLIAEILLLCANEPLSPKEYLLSVCGSEEFLQMDHSLGSHKIFQKNKSVIQLHLQ 367
Query: 283 ----------DENEAKRIPGEMETLYNFTVLGK-SFKCLPSSEKKPLILEKQNHQLETLL 137
++E P + L FT + K S +CL + +++K N +E LL
Sbjct: 368 KNRDTPGKLSRKSEDDHSPFHLNQLLEFTHIWKISRQCLST------VMKKYNLHVEHLL 421
Query: 136 LYFKPESDIIRERLNT 89
KP+ D+ + L++
Sbjct: 422 ---KPQKDMEEKHLSS 434
>sp|Q7V0W1|SYC_PROMP Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 492
Score = 30.0 bits (66), Expect = 8.6
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Frame = -3
Query: 370 VEQNMYSLIQYANGNDKFEYPNKSLLQLHDENEAKRIPGEMETLYNFTVLGKSFKCLPSS 191
VE+ +I Y K ++ N L+ I + L NF + K L +
Sbjct: 348 VEETYKDMINYEISQKKIKFTNALNNDLNTAGAIAIIYELAKPLKNFINQFQRIKNLEIN 407
Query: 190 EKKPLILEKQNHQLETL--LLYFKPESDIIRERLNTKKIIKFIPKQLPNIANVDYSNLFK 17
+ L + LE L +L K E II R+N +I+ I K+L DY+ K
Sbjct: 408 TNEKFHLRETFKTLEELTDVLGLKKEEIIIDNRINEDQILSLINKRLGAKKEKDYAEADK 467
Query: 16 YK 11
+
Sbjct: 468 IR 469
>sp|O15078|CE29_HUMAN Centrosomal protein Cep290
Length = 1539
Score = 30.0 bits (66), Expect = 8.6
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 2/156 (1%)
Frame = -3
Query: 655 QKKLIGKEQSMNILTQKAKEQMFFLHNERHFSVDDLLENFPSTRKSCEYVVTRPLPILSL 476
Q+ L + + +K +E + LH+ D L F T + + + P P+ +
Sbjct: 620 QRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQT--AWDLMKQSPTPVPTN 677
Query: 475 VELIRFNERIINRLIQVKSLSIKNKLDRYEQFLWIVEQNMYSLIQYANGNDKFEYPN-KS 299
IR E + + + + S+ + L + ++ V Q++ + K E+ N K
Sbjct: 678 KHFIRLAE--MEQTVAEQDDSLSSLLVKLKK----VSQDLERQREITELKVK-EFENIKL 730
Query: 298 LLQLHDENEAKRIPGEMETL-YNFTVLGKSFKCLPS 194
LQ + E+E K++ E+E L Y K +CL S
Sbjct: 731 QLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKS 766
>sp|Q64654|CP51A_RAT Cytochrome P450 51A1 (CYPLI) (P450LI) (Sterol 14-alpha demethylase)
(Lanosterol 14-alpha demethylase) (LDM) (P450-14DM)
Length = 503
Score = 30.0 bits (66), Expect = 8.6
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = -3
Query: 241 LYNFTVLGKSFKCLPSSEKKPLILEKQNHQLETLLLYFKPESDIIRERLNTKKIIKFIPK 62
+++FT++GK+F L S+ L+ +N L +Y RL T K +
Sbjct: 95 VFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEEVY---------GRLTTPVFGKGVAY 145
Query: 61 QLPNIANVDYSNLFKYKIN 5
+PN ++ + K +N
Sbjct: 146 DVPNAVFLEQKKILKSGLN 164
>sp|P59523|UPPP_BUCBP Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
(Bacitracin resistance protein)
Length = 268
Score = 30.0 bits (66), Expect = 8.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 390 MNNFYGL-LNKICIL*FNMQMVMINSNIPINHCCNYMTKMKLREFLV 253
+NNFY + +N I +L I SNI I C N M L F++
Sbjct: 207 INNFYDISINNIPMLFSGFLSAFITSNIVIKRCLNTMKNCSLIPFII 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,376,588
Number of Sequences: 369166
Number of extensions: 1462422
Number of successful extensions: 4087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)