Planaria EST Database


DrC_01160

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01160
         (205 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33176|KINH_HUMAN  Kinesin heavy chain (Ubiquitous kinesi...    41   0.001
sp|Q61768|KINH_MOUSE  Kinesin heavy chain (Ubiquitous kinesi...    41   0.001
sp|O60282|KIF5C_HUMAN  Kinesin heavy chain isoform 5C (Kines...    40   0.002
sp|P28738|KIF5C_MOUSE  Kinesin heavy chain isoform 5C (Kines...    40   0.002
sp|P21613|KINH_LOLPE  Kinesin heavy chain                          38   0.008
sp|P17210|KINH_DROME  Kinesin heavy chain                          38   0.008
sp|P35978|KINH_STRPU  Kinesin heavy chain                          36   0.024
sp|Q12840|KINN_HUMAN  Neuronal kinesin heavy chain (NKHC) (K...    33   0.16 
sp|P33175|KINN_MOUSE  Neuronal kinesin heavy chain (NKHC) (K...    33   0.16 
sp|P34540|KINH_CAEEL  Kinesin heavy chain (Uncoordinated pro...    33   0.20 
>sp|P33176|KINH_HUMAN Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
          Length = 963

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +RS+NM+ R   A IAKPI+ G
Sbjct: 895 YQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPG 927
>sp|Q61768|KINH_MOUSE Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
          Length = 963

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +RS+NM+ R   A IAKPI+ G
Sbjct: 895 YQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPG 927
>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
           2)
          Length = 957

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +R++NM+ R   A IAKPI+ G
Sbjct: 897 YQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPG 929
>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
           2)
          Length = 956

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +R++NM+ R   A IAKPI+ G
Sbjct: 896 YQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPG 928
>sp|P21613|KINH_LOLPE Kinesin heavy chain
          Length = 967

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +R +N++ R   A IAKPI+ G
Sbjct: 896 YQHEVDRIKEAVRQKNLARRGHAAQIAKPIRPG 928
>sp|P17210|KINH_DROME Kinesin heavy chain
          Length = 975

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
 Frame = +3

Query: 3    YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG-GAVA 104
            YQ EVDRIKE +R +++  R   A IAKPI++G GA+A
Sbjct: 917  YQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQGAIA 954
>sp|P35978|KINH_STRPU Kinesin heavy chain
          Length = 1031

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRI+E +R RN + R   A IAK I+AG
Sbjct: 892 YQQEVDRIREAVRQRNFAKRGSSAQIAKAIRAG 924
>sp|Q12840|KINN_HUMAN Neuronal kinesin heavy chain (NKHC) (Kinesin heavy chain isoform
           5A) (Kinesin heavy chain neuron-specific 1)
          Length = 1032

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +R ++   R   A IAKP++ G
Sbjct: 893 YQQEVDRIKEAVRYKSSGKRAHSAQIAKPVRPG 925
>sp|P33175|KINN_MOUSE Neuronal kinesin heavy chain (NKHC) (Kinesin heavy chain isoform
           5A) (Kinesin heavy chain neuron-specific 1)
          Length = 1027

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
           YQ EVDRIKE +R ++   R   A IAKP++ G
Sbjct: 893 YQQEVDRIKEAVRYKSSGKRGHSAQIAKPVRPG 925
>sp|P34540|KINH_CAEEL Kinesin heavy chain (Uncoordinated protein 116)
          Length = 815

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   YQSEVDRIKETIRSRNM-SMRA-LIAKPIQAG 92
           YQ EV+RIKE +R RNM  M A  I KPI+ G
Sbjct: 764 YQQEVERIKEAVRQRNMRRMNAPQIVKPIRPG 795
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,085,536
Number of Sequences: 369166
Number of extensions: 291044
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)