Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D10
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33176|KINH_HUMAN Kinesin heavy chain (Ubiquitous kinesi... 41 0.001
sp|Q61768|KINH_MOUSE Kinesin heavy chain (Ubiquitous kinesi... 41 0.001
sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C (Kines... 40 0.002
sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C (Kines... 40 0.002
sp|P21613|KINH_LOLPE Kinesin heavy chain 38 0.008
sp|P17210|KINH_DROME Kinesin heavy chain 38 0.008
sp|P35978|KINH_STRPU Kinesin heavy chain 36 0.024
sp|Q12840|KINN_HUMAN Neuronal kinesin heavy chain (NKHC) (K... 33 0.16
sp|P33175|KINN_MOUSE Neuronal kinesin heavy chain (NKHC) (K... 33 0.16
sp|P34540|KINH_CAEEL Kinesin heavy chain (Uncoordinated pro... 33 0.20
>sp|P33176|KINH_HUMAN Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
Length = 963
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +RS+NM+ R A IAKPI+ G
Sbjct: 895 YQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPG 927
>sp|Q61768|KINH_MOUSE Kinesin heavy chain (Ubiquitous kinesin heavy chain) (UKHC)
Length = 963
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +RS+NM+ R A IAKPI+ G
Sbjct: 895 YQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPG 927
>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
2)
Length = 957
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +R++NM+ R A IAKPI+ G
Sbjct: 897 YQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPG 929
>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
2)
Length = 956
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +R++NM+ R A IAKPI+ G
Sbjct: 896 YQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPG 928
>sp|P21613|KINH_LOLPE Kinesin heavy chain
Length = 967
Score = 37.7 bits (86), Expect = 0.008
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +R +N++ R A IAKPI+ G
Sbjct: 896 YQHEVDRIKEAVRQKNLARRGHAAQIAKPIRPG 928
>sp|P17210|KINH_DROME Kinesin heavy chain
Length = 975
Score = 37.7 bits (86), Expect = 0.008
Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 4/38 (10%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG-GAVA 104
YQ EVDRIKE +R +++ R A IAKPI++G GA+A
Sbjct: 917 YQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQGAIA 954
>sp|P35978|KINH_STRPU Kinesin heavy chain
Length = 1031
Score = 36.2 bits (82), Expect = 0.024
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRI+E +R RN + R A IAK I+AG
Sbjct: 892 YQQEVDRIREAVRQRNFAKRGSSAQIAKAIRAG 924
>sp|Q12840|KINN_HUMAN Neuronal kinesin heavy chain (NKHC) (Kinesin heavy chain isoform
5A) (Kinesin heavy chain neuron-specific 1)
Length = 1032
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +R ++ R A IAKP++ G
Sbjct: 893 YQQEVDRIKEAVRYKSSGKRAHSAQIAKPVRPG 925
>sp|P33175|KINN_MOUSE Neuronal kinesin heavy chain (NKHC) (Kinesin heavy chain isoform
5A) (Kinesin heavy chain neuron-specific 1)
Length = 1027
Score = 33.5 bits (75), Expect = 0.16
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNMSMR---ALIAKPIQAG 92
YQ EVDRIKE +R ++ R A IAKP++ G
Sbjct: 893 YQQEVDRIKEAVRYKSSGKRGHSAQIAKPVRPG 925
>sp|P34540|KINH_CAEEL Kinesin heavy chain (Uncoordinated protein 116)
Length = 815
Score = 33.1 bits (74), Expect = 0.20
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +3
Query: 3 YQSEVDRIKETIRSRNM-SMRA-LIAKPIQAG 92
YQ EV+RIKE +R RNM M A I KPI+ G
Sbjct: 764 YQQEVERIKEAVRQRNMRRMNAPQIVKPIRPG 795
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,085,536
Number of Sequences: 369166
Number of extensions: 291044
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)