Planaria EST Database


DrC_01158

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01158
         (875 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NFW9|MYRIP_HUMAN  Rab effector MyRIP (Myosin-VIIa- and ...    62   2e-09
sp|Q8TDW5|SYTL5_HUMAN  Synaptotagmin-like protein 5                60   6e-09
sp|Q9Y2J0|RP3A_HUMAN  Rabphilin-3A (Exophilin-1)                   59   1e-08
sp|Q8K3I4|MYRIP_MOUSE  Rab effector MyRIP (Myosin-VIIa- and ...    59   2e-08
sp|Q06846|RP3A_BOVIN  Rabphilin-3A (Exophilin-1)                   58   3e-08
sp|P47709|RP3A_RAT  Rabphilin-3A (Exophilin-1)                     57   7e-08
sp|P47708|RP3A_MOUSE  Rabphilin-3A (Exophilin-1)                   57   9e-08
sp|Q80T23|SYTL5_MOUSE  Synaptotagmin-like protein 5                56   1e-07
sp|Q96C24|SYTL4_HUMAN  Synaptotagmin-like protein 4 (Exophil...    56   1e-07
sp|Q8VHQ7|SYTL4_RAT  Synaptotagmin-like protein 4 (Exophilin...    54   4e-07
>sp|Q8NFW9|MYRIP_HUMAN Rab effector MyRIP (Myosin-VIIa- and Rab-interacting protein)
           (Exophilin-8) (Slp homolog lacking C2 domains-c)
          Length = 859

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEI--KGELKSSTKKQANISKTNC 226
           L++S L + E   +LQV++R+  L   E  RLS +  ++  +G   S   K     +  C
Sbjct: 5   LDLSGLTDDETEHVLQVVQRDFNLRKKEEERLSELKQKLDEEGSKCSILSKHQQFVEHCC 64

Query: 227 LYCSSN----LNDFDGCEKCQKNVCMKCCKSFGTQNVKLCKICYQEMLLEAKKAKWFYEN 394
           + C S     +N    C  C+ NVC  CC     +   +C +C Q  LL A+  +WFY N
Sbjct: 65  MRCCSPFTFLVNTKRQCGDCKFNVCKSCCSYQKHEKAWVCCVCQQARLLRAQSLEWFYNN 124

Query: 395 I 397
           +
Sbjct: 125 V 125
>sp|Q8TDW5|SYTL5_HUMAN Synaptotagmin-like protein 5
          Length = 730

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLY 232
           +N+S L +HEK ++L VL+R+  L   E+ R+ ++ NE+    + S K Q   S+  C++
Sbjct: 8   INLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRV-CVH 66

Query: 233 CSSNL----NDFDGCEKCQKNVCMKCCKSFGTQNVKLCKICYQEMLLEAKKAKWFYE 391
           C  NL    +  D C+ C   VC + C+  G      C +C +   L     +WF+E
Sbjct: 67  CHRNLGLIFDRGDPCQACSLRVCRE-CRVAGPNGSWKCTVCDKIAQLRIITGEWFFE 122
>sp|Q9Y2J0|RP3A_HUMAN Rabphilin-3A (Exophilin-1)
          Length = 694

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
 Frame = +2

Query: 68  LNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLYCSSNL 247
           L + EK I+ +V+ R  K+ + E  R+ R+ +     L++  K  A      C+ C   L
Sbjct: 50  LTDEEKEIINRVIARAEKMEEMEQERIGRLVDR----LENMRKNVAGDGVNRCILCGEQL 105

Query: 248 NDFDG----CEKCQKNVCMKCCKSFGTQ--NVKLCKICYQEMLLEAKKAKWFYENIPQ 403
                    CE C+KNVC KC      +  +V LCKIC ++  +  +   WF++  P+
Sbjct: 106 GMLGSACVVCEDCKKNVCTKCGVETNNRLHSVWLCKICIEQREVWKRSGAWFFKGFPK 163
>sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP (Myosin-VIIa- and Rab-interacting protein)
           (Exophilin-8) (Slp homolog lacking C2 domains-c)
          Length = 856

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELK--SSTKKQANISKTNC 226
           L++S L + E   +LQV++R+  L   E  RLS M   +  E    S   K     +  C
Sbjct: 5   LDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCC 64

Query: 227 LYCSSN----LNDFDGCEKCQKNVCMKCCKSFGTQNVKLCKICYQEMLLEAKKAKWFYEN 394
           + C S     +N    C +C+ +VC  CC     + + +C +C Q  LL  +  +WFY N
Sbjct: 65  MRCCSPFTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNN 124

Query: 395 I 397
           +
Sbjct: 125 V 125
>sp|Q06846|RP3A_BOVIN Rabphilin-3A (Exophilin-1)
          Length = 704

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
 Frame = +2

Query: 68  LNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLYCSSNL 247
           L + EK I+ +V+ R  K+ + E  R+ R+ +     L++  K  A      C+ C   L
Sbjct: 50  LTDEEKEIINRVIARAEKMEEMEQERIGRLVDR----LENMRKNVAGDGVNRCILCGEQL 105

Query: 248 NDFDG----CEKCQKNVCMKCCKSFGTQN-----VKLCKICYQEMLLEAKKAKWFYENIP 400
                    CE C+KNVC KC     T N     V LCKIC ++  +  +   WF++  P
Sbjct: 106 GMLGSACVVCEDCKKNVCTKC--GVETSNNRPHPVWLCKICIEQREVWKRSGAWFFKGFP 163

Query: 401 Q 403
           +
Sbjct: 164 K 164
>sp|P47709|RP3A_RAT Rabphilin-3A (Exophilin-1)
          Length = 684

 Score = 57.0 bits (136), Expect = 7e-08
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
 Frame = +2

Query: 68  LNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLYCSSNL 247
           L + EK I+ +V+ R  K+   E  R+ R+ +     L++  K  A      C+ C   L
Sbjct: 46  LTDEEKEIINRVIARAEKMETMEQERIGRLVDR----LETMRKNVAGDGVNRCILCGEQL 101

Query: 248 NDFDG----CEKCQKNVCMKCCKSFGTQN-----VKLCKICYQEMLLEAKKAKWFYENIP 400
                    CE C+KNVC KC     T N     V LCKIC ++  +  +   WF++  P
Sbjct: 102 GMLGSACVVCEDCKKNVCTKC--GVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFP 159

Query: 401 Q 403
           +
Sbjct: 160 K 160
>sp|P47708|RP3A_MOUSE Rabphilin-3A (Exophilin-1)
          Length = 681

 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
 Frame = +2

Query: 68  LNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLYCSSNL 247
           L + EK I+ +V+ R  K+   E  R+ R+ +     L++  K  A      C+ C   L
Sbjct: 46  LTDEEKEIINRVIARAEKMEAMEQERIGRLVDR----LETMRKNVAGDGVNRCILCGEQL 101

Query: 248 NDFDG----CEKCQKNVCMKCCKSFGTQN-----VKLCKICYQEMLLEAKKAKWFYENIP 400
                    CE C+KNVC KC     T N     V LCKIC ++  +  +   WF++  P
Sbjct: 102 GMLGSACVVCEDCKKNVCTKC--GVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFP 159

Query: 401 Q 403
           +
Sbjct: 160 K 160
>sp|Q80T23|SYTL5_MOUSE Synaptotagmin-like protein 5
          Length = 753

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEIKGELKSSTKKQANISKTNCLY 232
           +N+S L +HEK ++L VL+R+  L   E+ R+ ++ NE+    + S K     S+  C++
Sbjct: 8   INLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTHQEASRV-CVH 66

Query: 233 CSSNL----NDFDGCEKCQKNVCMKCCKSFGTQNVKLCKICYQEMLLEAKKAKWFYE 391
           C   L    +  D C+ C   VC + C+  G      C +C +   L     +WF E
Sbjct: 67  CHKTLGLIFDRGDPCQACSLRVCSE-CRVTGLDGSWKCTVCAKVAQLRIISGEWFLE 122
>sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
          Length = 671

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEI-KGELKSSTKKQANISKTNCL 229
           L++S L+E EK ++L VL+R+ ++   +  R+ R+ NE+ + + K + +   + S   C 
Sbjct: 5   LDLSFLSEEEKDLILSVLQRDEEVRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCA 64

Query: 230 YCSSNLNDF----DGCEKCQKNVCMKCC--KSFGTQNVKLCKICYQEMLLEAKKAKWFYE 391
            C  +L       + C  C   VC  C   +S GT     CK+C +E+ L+     WFY+
Sbjct: 65  RCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWR---CKVCAKEIELKKATGDWFYD 121
>sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)
          Length = 672

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
 Frame = +2

Query: 53  LNISCLNEHEKTILLQVLERNNKLVDHENVRLSRMDNEI-KGELKSSTKKQANISKTNCL 229
           L++S L+E E+ ++L VL+R+ +L   +  R+ R+ NE+ + + K + +   + S   C 
Sbjct: 5   LDLSFLSEMERDLILSVLQRDEELRKADEKRIRRLKNELLEIKRKGAKRGSQHYSDRTCA 64

Query: 230 YCSSNLNDF----DGCEKCQKNVCMKCCKSFGTQNVKLCKICYQEMLLEAKKAKWFYE 391
            C   L       + C  C   VC +C +   +     CK+C +E+ L+     WFY+
Sbjct: 65  RCQEGLGRLISKSNTCVGCNHLVCREC-RVLESNGSWRCKVCSKEIELKKATGDWFYD 121
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,921,909
Number of Sequences: 369166
Number of extensions: 1313728
Number of successful extensions: 4529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4511
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)