Planaria EST Database


DrC_01157

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01157
         (776 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11024|NNTM_BOVIN  NAD(P) transhydrogenase, mitochondrial...   353   2e-97
sp|Q13423|NNTM_HUMAN  NAD(P) transhydrogenase, mitochondrial...   353   3e-97
sp|Q61941|NNTM_MOUSE  NAD(P) transhydrogenase, mitochondrial...   351   1e-96
sp|P43010|PNTB_HAEIN  NAD(P) transhydrogenase subunit beta (...   279   5e-75
sp|P0AB70|PNTB_SHIFL  NAD(P) transhydrogenase subunit beta (...   278   2e-74
sp|Q59765|PNTB_RHORU  NAD(P) transhydrogenase subunit beta (...   220   3e-57
sp|Q03522|MURD_BACSU  UDP-N-acetylmuramoylalanine--D-glutama...    31   3.3  
sp|P0A4R7|UREG_BORBR  Urease accessory protein ureG >gi|6124...    31   3.3  
sp|Q62465|VAT1_MOUSE  Synaptic vesicle membrane protein VAT-...    31   4.3  
sp|Q9W2N0|CAPZA_DROME  F-actin capping protein alpha subunit       31   4.3  
>sp|P11024|NNTM_BOVIN NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
            transhydrogenase) (Nicotinamide nucleotide
            transhydrogenase)
          Length = 1086

 Score =  353 bits (907), Expect = 2e-97
 Identities = 175/222 (78%), Positives = 194/222 (87%)
 Frame = +1

Query: 1    SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
            +LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+  +I G HTE  +D   +M  
Sbjct: 863  ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIR 922

Query: 181  NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
             A +IIITPGYGLC AKAQYP+A+LV +L  +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923  EANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982

Query: 361  PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
            PYD+VLEMDEINHDFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983  PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042

Query: 541  RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
            R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
            transhydrogenase) (Nicotinamide nucleotide
            transhydrogenase)
          Length = 1086

 Score =  353 bits (906), Expect = 3e-97
 Identities = 175/222 (78%), Positives = 194/222 (87%)
 Frame = +1

Query: 1    SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
            +LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+  +I G HTE  +D   +M  
Sbjct: 863  ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIR 922

Query: 181  NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
             A +IIITPGYGLC AKAQYP+A+LV +L  +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923  EANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982

Query: 361  PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
            PYD+VLEMDEINHDFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983  PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042

Query: 541  RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
            R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|Q61941|NNTM_MOUSE NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
            transhydrogenase) (Nicotinamide nucleotide
            transhydrogenase)
          Length = 1086

 Score =  351 bits (900), Expect = 1e-96
 Identities = 174/222 (78%), Positives = 193/222 (86%)
 Frame = +1

Query: 1    SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
            +LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+  +I G HTE  +D   EM  
Sbjct: 863  ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAVEMIR 922

Query: 181  NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
             A +I+ITPGYGLC AKAQYP+A+LV +L  +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923  EANSIVITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982

Query: 361  PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
            PYD+VLEMDEIN DFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983  PYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042

Query: 541  RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
            R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|P43010|PNTB_HAEIN NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta)
          Length = 474

 Score =  279 bits (714), Expect = 5e-75
 Identities = 138/215 (64%), Positives = 168/215 (78%)
 Frame = +1

Query: 1   SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
           +L+GSSGAILSYIMCKAMNRS  +VI GG+G         +  +G H E T ++VAE+  
Sbjct: 259 ALVGSSGAILSYIMCKAMNRSFVSVIAGGFGNDVQVSSSEE--QGEHRETTAEEVAELLK 316

Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
           NA ++IITPGYG+ VA+AQYP+A++   L+ +G  VRFGIHPVAGR+PG +NVLLAEA V
Sbjct: 317 NASSVIITPGYGMAVAQAQYPVADITAKLRERGVNVRFGIHPVAGRLPGHMNVLLAEAKV 376

Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
           PYDVVLEMDEIN DF +TD+VLVIGANDTVN AA EDPNS IAGMPVL VW ++ VIV K
Sbjct: 377 PYDVVLEMDEINDDFADTDVVLVIGANDTVNPAAMEDPNSPIAGMPVLEVWKAQNVIVFK 436

Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
           R++ VGYA V NP+FFKENT ML GDAK   +++L
Sbjct: 437 RSMAVGYAGVQNPLFFKENTQMLFGDAKDRVEDIL 471
>sp|P0AB70|PNTB_SHIFL NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta)
 sp|P0AB67|PNTB_ECOLI NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta)
 sp|P0AB68|PNTB_ECOL6 NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta)
 sp|P0AB69|PNTB_ECO57 NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta)
          Length = 462

 Score =  278 bits (710), Expect = 2e-74
 Identities = 136/215 (63%), Positives = 170/215 (79%)
 Frame = +1

Query: 1   SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
           +L+GSSGAILSYIMCKAMNRS  +VI GG+GT   + G  +++ G H E T ++ AE+  
Sbjct: 246 ALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTGDDQEV-GEHREITAEETAELLK 304

Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
           N+ ++IITPGYG+ VA+AQYP+AE+   L+++G  VRFGIHPVAGR+PG +NVLLAEA V
Sbjct: 305 NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKV 364

Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
           PYD+VLEMDEIN DF +TD VLVIGANDTVN AA++DP S IAGMPVL VW ++ VIV K
Sbjct: 365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFK 424

Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
           R++  GYA V NP+FFKENT+ML GDAK   D +L
Sbjct: 425 RSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAIL 459
>sp|Q59765|PNTB_RHORU NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
           transhydrogenase subunit beta) (Nicotinamide nucleotide
           transhydrogenase subunit beta) (Proton-translocating
           transhydrogenase NADP(H)-binding component) (dIII)
          Length = 464

 Score =  220 bits (561), Expect = 3e-57
 Identities = 115/217 (52%), Positives = 149/217 (68%), Gaps = 2/217 (0%)
 Frame = +1

Query: 1   SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSS--YAGGQAKKIEGVHTEATVDQVAEM 174
           +L+GSSGAILSYIMCK MNRS+ NVILGG+G+     A G A     V   +  D  A +
Sbjct: 245 ALVGSSGAILSYIMCKGMNRSIFNVILGGFGSEGGVAAAGGAAGDRSVKAGSAED-AAFI 303

Query: 175 AVNAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEA 354
             NA  +II PGYG+ VA+AQ+ L E+  +LK +G EV + IHPVAGRMPG +NVLLAEA
Sbjct: 304 MKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEA 363

Query: 355 GVPYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIV 534
            VPYD V E++EIN  F   D+  VIGAND  N AA+ DP+S I GMP+L V  +  V+ 
Sbjct: 364 NVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLF 423

Query: 535 VKRTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
           +KR++  GYA V+N +FF+ NT ML GDAKK+ + ++
Sbjct: 424 IKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIV 460
>sp|Q03522|MURD_BACSU UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme)
          Length = 451

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 265 LKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGVPYDVVLEMDEINHDFP 408
           L  KG EV  G HPV+     Q+ +L+   G+PY+ ++  +      P
Sbjct: 52  LSEKGIEVVCGEHPVSLFDQHQITILIKNPGIPYENIMVQEAEKRGIP 99
>sp|P0A4R7|UREG_BORBR Urease accessory protein ureG
 sp|P0A4R8|UREG_BORPA Urease accessory protein ureG
          Length = 214

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
 Frame = +1

Query: 223 VAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGVPYDVVLE------- 381
           V KA YP  +L+ +      +    +  ++G +P +  + +   G P+  + E       
Sbjct: 36  VCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLI 95

Query: 382 -MDEINHDFPETDLVLVIGANDTVNSAAEEDPN---------SIIAGMPVLRVW----TS 519
            +D++   FP+ D+V V    D  N AA   P           + +G  + R      T 
Sbjct: 96  AIDQMLEQFPDADIVFVESGGD--NLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITK 153

Query: 520 KQVIVVKRTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNL 642
             + ++ +T    Y   D  +  + +T  + GD   V  NL
Sbjct: 154 SDLFIINKTDLAPYVGADLAV-MEADTRRMRGDKPFVMCNL 193
>sp|Q62465|VAT1_MOUSE Synaptic vesicle membrane protein VAT-1 homolog
          Length = 406

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
 Frame = +1

Query: 58  RSLPNVILGGYGTSSYAGGQAKKIEGV------HTEATVDQVAEMAVNAKNIIITPGYGL 219
           R++ NV +  +GT+S +  +  K  GV      HT   VD++ +++    +I++ P  G 
Sbjct: 223 RTVENVTV--FGTASASKHEVLKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGS 280

Query: 220 CVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEA 354
             AK  +       LLK  GK V +G   +A  + G    L+A A
Sbjct: 281 DTAKGYH-------LLKPMGKVVTYG---MANLLTGPKRNLMAMA 315
>sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit
          Length = 286

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 177 SHFRHLINSCFSVYTFNFLCLTTCVRAGSITPKNH 73
           SH+RH ++S F     N + LT C+      PKN+
Sbjct: 132 SHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNY 166
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,099,169
Number of Sequences: 369166
Number of extensions: 1529741
Number of successful extensions: 4172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4168
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)