Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C09
(776 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11024|NNTM_BOVIN NAD(P) transhydrogenase, mitochondrial... 353 2e-97
sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial... 353 3e-97
sp|Q61941|NNTM_MOUSE NAD(P) transhydrogenase, mitochondrial... 351 1e-96
sp|P43010|PNTB_HAEIN NAD(P) transhydrogenase subunit beta (... 279 5e-75
sp|P0AB70|PNTB_SHIFL NAD(P) transhydrogenase subunit beta (... 278 2e-74
sp|Q59765|PNTB_RHORU NAD(P) transhydrogenase subunit beta (... 220 3e-57
sp|Q03522|MURD_BACSU UDP-N-acetylmuramoylalanine--D-glutama... 31 3.3
sp|P0A4R7|UREG_BORBR Urease accessory protein ureG >gi|6124... 31 3.3
sp|Q62465|VAT1_MOUSE Synaptic vesicle membrane protein VAT-... 31 4.3
sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit 31 4.3
>sp|P11024|NNTM_BOVIN NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
transhydrogenase) (Nicotinamide nucleotide
transhydrogenase)
Length = 1086
Score = 353 bits (907), Expect = 2e-97
Identities = 175/222 (78%), Positives = 194/222 (87%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
+LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+ +I G HTE +D +M
Sbjct: 863 ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIR 922
Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
A +IIITPGYGLC AKAQYP+A+LV +L +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923 EANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982
Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
PYD+VLEMDEINHDFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983 PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042
Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|Q13423|NNTM_HUMAN NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
transhydrogenase) (Nicotinamide nucleotide
transhydrogenase)
Length = 1086
Score = 353 bits (906), Expect = 3e-97
Identities = 175/222 (78%), Positives = 194/222 (87%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
+LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+ +I G HTE +D +M
Sbjct: 863 ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAIDMIR 922
Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
A +IIITPGYGLC AKAQYP+A+LV +L +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923 EANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982
Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
PYD+VLEMDEINHDFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983 PYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042
Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|Q61941|NNTM_MOUSE NAD(P) transhydrogenase, mitochondrial precursor (Pyridine nucleotide
transhydrogenase) (Nicotinamide nucleotide
transhydrogenase)
Length = 1086
Score = 351 bits (900), Expect = 1e-96
Identities = 174/222 (78%), Positives = 193/222 (86%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
+LIGSSGAILSYIMC AMNRSL NVILGGYGT+S AGG+ +I G HTE +D EM
Sbjct: 863 ALIGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNAVEMIR 922
Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
A +I+ITPGYGLC AKAQYP+A+LV +L +GK+VRFGIHPVAGRMPGQLNVLLAEAGV
Sbjct: 923 EANSIVITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGV 982
Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
PYD+VLEMDEIN DFP+TDLVLVIGANDTVNSAA+EDPNSIIAGMPVL VW SKQVIV+K
Sbjct: 983 PYDIVLEMDEINSDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMK 1042
Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLLAKVKEHY 666
R+LGVGYAAVDNPIF+K NT MLLGDAKK CD L AKV+E Y
Sbjct: 1043 RSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESY 1084
>sp|P43010|PNTB_HAEIN NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta)
Length = 474
Score = 279 bits (714), Expect = 5e-75
Identities = 138/215 (64%), Positives = 168/215 (78%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
+L+GSSGAILSYIMCKAMNRS +VI GG+G + +G H E T ++VAE+
Sbjct: 259 ALVGSSGAILSYIMCKAMNRSFVSVIAGGFGNDVQVSSSEE--QGEHRETTAEEVAELLK 316
Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
NA ++IITPGYG+ VA+AQYP+A++ L+ +G VRFGIHPVAGR+PG +NVLLAEA V
Sbjct: 317 NASSVIITPGYGMAVAQAQYPVADITAKLRERGVNVRFGIHPVAGRLPGHMNVLLAEAKV 376
Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
PYDVVLEMDEIN DF +TD+VLVIGANDTVN AA EDPNS IAGMPVL VW ++ VIV K
Sbjct: 377 PYDVVLEMDEINDDFADTDVVLVIGANDTVNPAAMEDPNSPIAGMPVLEVWKAQNVIVFK 436
Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
R++ VGYA V NP+FFKENT ML GDAK +++L
Sbjct: 437 RSMAVGYAGVQNPLFFKENTQMLFGDAKDRVEDIL 471
>sp|P0AB70|PNTB_SHIFL NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta)
sp|P0AB67|PNTB_ECOLI NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta)
sp|P0AB68|PNTB_ECOL6 NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta)
sp|P0AB69|PNTB_ECO57 NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta)
Length = 462
Score = 278 bits (710), Expect = 2e-74
Identities = 136/215 (63%), Positives = 170/215 (79%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSSYAGGQAKKIEGVHTEATVDQVAEMAV 180
+L+GSSGAILSYIMCKAMNRS +VI GG+GT + G +++ G H E T ++ AE+
Sbjct: 246 ALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSTGDDQEV-GEHREITAEETAELLK 304
Query: 181 NAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGV 360
N+ ++IITPGYG+ VA+AQYP+AE+ L+++G VRFGIHPVAGR+PG +NVLLAEA V
Sbjct: 305 NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKV 364
Query: 361 PYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIVVK 540
PYD+VLEMDEIN DF +TD VLVIGANDTVN AA++DP S IAGMPVL VW ++ VIV K
Sbjct: 365 PYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFK 424
Query: 541 RTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
R++ GYA V NP+FFKENT+ML GDAK D +L
Sbjct: 425 RSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAIL 459
>sp|Q59765|PNTB_RHORU NAD(P) transhydrogenase subunit beta (Pyridine nucleotide
transhydrogenase subunit beta) (Nicotinamide nucleotide
transhydrogenase subunit beta) (Proton-translocating
transhydrogenase NADP(H)-binding component) (dIII)
Length = 464
Score = 220 bits (561), Expect = 3e-57
Identities = 115/217 (52%), Positives = 149/217 (68%), Gaps = 2/217 (0%)
Frame = +1
Query: 1 SLIGSSGAILSYIMCKAMNRSLPNVILGGYGTSS--YAGGQAKKIEGVHTEATVDQVAEM 174
+L+GSSGAILSYIMCK MNRS+ NVILGG+G+ A G A V + D A +
Sbjct: 245 ALVGSSGAILSYIMCKGMNRSIFNVILGGFGSEGGVAAAGGAAGDRSVKAGSAED-AAFI 303
Query: 175 AVNAKNIIITPGYGLCVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEA 354
NA +II PGYG+ VA+AQ+ L E+ +LK +G EV + IHPVAGRMPG +NVLLAEA
Sbjct: 304 MKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEA 363
Query: 355 GVPYDVVLEMDEINHDFPETDLVLVIGANDTVNSAAEEDPNSIIAGMPVLRVWTSKQVIV 534
VPYD V E++EIN F D+ VIGAND N AA+ DP+S I GMP+L V + V+
Sbjct: 364 NVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLF 423
Query: 535 VKRTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNLL 645
+KR++ GYA V+N +FF+ NT ML GDAKK+ + ++
Sbjct: 424 IKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIV 460
>sp|Q03522|MURD_BACSU UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 451
Score = 31.2 bits (69), Expect = 3.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 265 LKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGVPYDVVLEMDEINHDFP 408
L KG EV G HPV+ Q+ +L+ G+PY+ ++ + P
Sbjct: 52 LSEKGIEVVCGEHPVSLFDQHQITILIKNPGIPYENIMVQEAEKRGIP 99
>sp|P0A4R7|UREG_BORBR Urease accessory protein ureG
sp|P0A4R8|UREG_BORPA Urease accessory protein ureG
Length = 214
Score = 31.2 bits (69), Expect = 3.3
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 21/161 (13%)
Frame = +1
Query: 223 VAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEAGVPYDVVLE------- 381
V KA YP +L+ + + + ++G +P + + + G P+ + E
Sbjct: 36 VCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLI 95
Query: 382 -MDEINHDFPETDLVLVIGANDTVNSAAEEDPN---------SIIAGMPVLRVW----TS 519
+D++ FP+ D+V V D N AA P + +G + R T
Sbjct: 96 AIDQMLEQFPDADIVFVESGGD--NLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITK 153
Query: 520 KQVIVVKRTLGVGYAAVDNPIFFKENTNMLLGDAKKVCDNL 642
+ ++ +T Y D + + +T + GD V NL
Sbjct: 154 SDLFIINKTDLAPYVGADLAV-MEADTRRMRGDKPFVMCNL 193
>sp|Q62465|VAT1_MOUSE Synaptic vesicle membrane protein VAT-1 homolog
Length = 406
Score = 30.8 bits (68), Expect = 4.3
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +1
Query: 58 RSLPNVILGGYGTSSYAGGQAKKIEGV------HTEATVDQVAEMAVNAKNIIITPGYGL 219
R++ NV + +GT+S + + K GV HT VD++ +++ +I++ P G
Sbjct: 223 RTVENVTV--FGTASASKHEVLKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGS 280
Query: 220 CVAKAQYPLAELVTLLKSKGKEVRFGIHPVAGRMPGQLNVLLAEA 354
AK + LLK GK V +G +A + G L+A A
Sbjct: 281 DTAKGYH-------LLKPMGKVVTYG---MANLLTGPKRNLMAMA 315
>sp|Q9W2N0|CAPZA_DROME F-actin capping protein alpha subunit
Length = 286
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 177 SHFRHLINSCFSVYTFNFLCLTTCVRAGSITPKNH 73
SH+RH ++S F N + LT C+ PKN+
Sbjct: 132 SHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNY 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,099,169
Number of Sequences: 369166
Number of extensions: 1529741
Number of successful extensions: 4172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4168
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)