Planaria EST Database


DrC_01156

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01156
         (466 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O62742|NLTP_RABIT  Nonspecific lipid-transfer protein, mi...   193   2e-49
sp|P32020|NLTP_MOUSE  Nonspecific lipid-transfer protein, mi...   191   5e-49
sp|P11915|NLTP_RAT  Nonspecific lipid-transfer protein, mito...   190   2e-48
sp|P22307|NLTP_HUMAN  Nonspecific lipid-transfer protein, mi...   189   3e-48
sp|Q07598|NLTP_CHICK  Nonspecific lipid-transfer protein, mi...   172   3e-43
sp|O26884|Y793_METTH  Hypothetical protein MTH793                 108   5e-24
sp|Q58944|YF49_METJA  Hypothetical protein MJ1549                  79   7e-15
sp|Q05493|THIK_YARLI  3-ketoacyl-CoA thiolase, peroxisomal p...    49   7e-06
sp|P07871|THIKB_RAT  3-ketoacyl-CoA thiolase B, peroxisomal ...    49   7e-06
sp|P21775|THIKA_RAT  3-ketoacyl-CoA thiolase A, peroxisomal ...    49   7e-06
>sp|O62742|NLTP_RABIT Nonspecific lipid-transfer protein, mitochondrial precursor (Sterol
           carrier protein 2) (SCP-2) (Sterol carrier protein X)
           (SCP-X) (SCPX)
          Length = 547

 Score =  193 bits (490), Expect = 2e-49
 Identities = 91/119 (76%), Positives = 98/119 (82%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           Y +SGL+P+D  VIELHDCFSANEL+TYEALGLCP G+ G  +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLRPSDIDVIELHDCFSANELLTYEALGLCPEGKGGALVDRGDNTYGGKWVINPSG 348

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
           GLISKGHPLGATG+AQC ELC  LR EAGKRQV  A  ALQHNLGLGGAA V  YK GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYKMGF 407
>sp|P32020|NLTP_MOUSE Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score =  191 bits (486), Expect = 5e-49
 Identities = 91/119 (76%), Positives = 95/119 (79%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           Y +SGL PND  VIELHDCFS NELITYEALGLCP GQ G  +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLTPNDVDVIELHDCFSVNELITYEALGLCPEGQGGTLVDRGDNTYGGKWVINPSG 348

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
           GLISKGHPLGATG+AQC ELC  LR EAGKRQV  A  ALQHNLGLGGA  V  Y+ GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAVVVTLYRMGF 407
>sp|P11915|NLTP_RAT Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score =  190 bits (482), Expect = 2e-48
 Identities = 90/119 (75%), Positives = 96/119 (80%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           Y +SGL P+D  VIELHDCFS NEL+TYEALGLCP GQ G  +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLGPSDVDVIELHDCFSTNELLTYEALGLCPEGQGGALVDRGDNTYGGKWVINPSG 348

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
           GLISKGHPLGATG+AQC ELC  LR EAGKRQV  A  ALQHNLGLGGAA V  Y+ GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGLGGAAVVTLYRMGF 407
>sp|P22307|NLTP_HUMAN Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score =  189 bits (480), Expect = 3e-48
 Identities = 89/119 (74%), Positives = 94/119 (78%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           Y +SGL PND  VIELHDCFS NEL+TYEALGLCP GQ    +D GDNTYGGK VINPSG
Sbjct: 289 YEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSG 348

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
           GLISKGHPLGATG+AQC ELC  LR EAGKRQV  A  ALQHNLG+GGA  V  YK GF
Sbjct: 349 GLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGF 407
>sp|Q07598|NLTP_CHICK Nonspecific lipid-transfer protein, mitochondrial precursor
           (NSL-TP) (Sterol carrier protein 2) (SCP-2) (Sterol
           carrier protein X) (SCP-X) (SCPX)
          Length = 547

 Score =  172 bits (437), Expect = 3e-43
 Identities = 84/119 (70%), Positives = 91/119 (76%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           + ++GLKP D  VIELHDCFS NE ITYEALGLCP G+A   ID GDNTYGGK VINPSG
Sbjct: 292 FKKAGLKPTDVDVIELHDCFSVNEFITYEALGLCPEGKACDLIDRGDNTYGGKWVINPSG 351

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAAYKKGF 362
           GLISKGHPLGATG+AQ  ELC  LR  AG+R+V  A  ALQHNLGLGGA  V  Y  GF
Sbjct: 352 GLISKGHPLGATGLAQSAELCWQLRGLAGRREVGGARRALQHNLGLGGAVVVTLYAMGF 410
>sp|O26884|Y793_METTH Hypothetical protein MTH793
          Length = 383

 Score =  108 bits (271), Expect = 5e-24
 Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSG 185
           +  + L P D  ++E+HDCFS N ++  E LG    G+ GR  ++G     G   +NPSG
Sbjct: 266 FKMAKLTPGDIDLVEVHDCFSINGILAVEDLGFVEKGEGGRAFEDGMTRIDGDIPVNPSG 325

Query: 186 GLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNL-GLGGAAFVAAYKK 356
           GL ++GHPLGATG+AQ  E+   LR EAGKRQV+ A   + HN+ G GG A V  + +
Sbjct: 326 GLKARGHPLGATGIAQAAEVVWQLRGEAGKRQVEGAEIGMTHNIGGTGGTAAVHIFSR 383
>sp|Q58944|YF49_METJA Hypothetical protein MJ1549
          Length = 392

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
 Frame = +3

Query: 6   YNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNT--YGGKHVINP 179
           Y  + ++P D  V E+HDCF+ N LI  E LG C  G+AG+ + +      Y G   +NP
Sbjct: 268 YKMANIEPKDVDVAEVHDCFAINGLILMEELGFCKKGEAGKIVYDKKIAIDYDGFPAVNP 327

Query: 180 SGGLISKGHPLGATGVAQCVELCLHLR--NEAGKRQVQSAT-YALQHNLG 320
           SGGL + GH LGATG+ Q  E+   L+   E   RQV+    Y +  N+G
Sbjct: 328 SGGLKAAGHALGATGIRQVGEIYWQLKQDKEVKDRQVEIKNGYGITVNVG 377
>sp|Q05493|THIK_YARLI 3-ketoacyl-CoA thiolase, peroxisomal precursor (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Peroxisomal 3-oxoacyl-CoA
           thiolase)
          Length = 414

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 34/115 (29%), Positives = 48/115 (41%)
 Frame = +3

Query: 3   VYNQSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPS 182
           V    GL  ND  V E+++ F++  L + +  G+                   +  +NP 
Sbjct: 321 VLEDLGLTVNDVDVFEINEAFASQALFSIQHCGI------------------DESKVNPR 362

Query: 183 GGLISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLGGAAFVAA 347
           GG I+ GHPLGATG  Q   L   L+    K  V S         G+G A+ V A
Sbjct: 363 GGAIAIGHPLGATGARQFATLLSELKESGKKVGVTSMCI----GTGMGAASLVVA 413
>sp|P07871|THIKB_RAT 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase
           B) (Acetyl-CoA acyltransferase B) (Peroxisomal
           3-oxoacyl-CoA thiolase B)
          Length = 424

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
 Frame = +3

Query: 12  QSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSGGL 191
           ++GL  ND  + E+++ F++  L   E LG+  P +                 +NP GG 
Sbjct: 331 KAGLTVNDIDIFEINEAFASQALYCVEKLGI--PAEK----------------VNPLGGA 372

Query: 192 ISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLG-GAAFVAAY 350
           I+ GHPLG TG  Q V L   L     KR+ + A   +   +G G GAA V  Y
Sbjct: 373 IALGHPLGCTGARQVVTLLNEL-----KRRGRRAYGVVSMCIGTGMGAAAVFEY 421
>sp|P21775|THIKA_RAT 3-ketoacyl-CoA thiolase A, peroxisomal precursor (Beta-ketothiolase
           A) (Acetyl-CoA acyltransferase A) (Peroxisomal
           3-oxoacyl-CoA thiolase A)
          Length = 424

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
 Frame = +3

Query: 12  QSGLKPNDFQVIELHDCFSANELITYEALGLCPPGQAGRFIDNGDNTYGGKHVINPSGGL 191
           ++GL  ND  + E+++ F++  L   E LG+  P +                 +NP GG 
Sbjct: 331 KAGLTVNDIDIFEINEAFASQALYCVEKLGI--PAEK----------------VNPLGGA 372

Query: 192 ISKGHPLGATGVAQCVELCLHLRNEAGKRQVQSATYALQHNLGLG-GAAFVAAY 350
           I+ GHPLG TG  Q V L   L     KR+ + A   +   +G G GAA V  Y
Sbjct: 373 IALGHPLGCTGARQVVTLLNEL-----KRRGRRAYGVVSMCIGTGMGAAAVFEY 421
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,946,581
Number of Sequences: 369166
Number of extensions: 1080748
Number of successful extensions: 2617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2594
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)